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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Podoviridae
Anticodon = GAT
HIT:
19 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.318913 (5 seq.)
>PHG181001858
KT962245
Podoviridae
Cellulophaga phage phi4:1_13 (KT962245)
88687
88761
+
Ile
GAT
[ENA]
¡û
>PHG181001875
KT962246
Podoviridae
Cellulophaga phage phi4:1_18 (KT962246)
88687
88761
+
Ile
GAT
[ENA]
¡û
>PHG181001892
KT962247
Podoviridae
Cellulophaga phage phi17:2_18 (KT962247)
88953
89027
+
Ile
GAT
[ENA]
¡û
>PHG14102290
KC821609
Podoviridae
Cellulophaga phage phi17:2 (KC821609)
88953
89027
+
Ile
GAT
[ENA]
¡û
>PHG14102337
KC821632
Podoviridae
Cellulophaga phage phi4:1 (KC821632)
88687
88761
+
Ile
GAT
[ENA]
¡û
Identical group No.398753 (2 seq.)
>PHG14102029
KC139517
Podoviridae
Salmonella phage FSL SP-058 TN106 (KC139517)
67272
67348
+
Ile
GAT
[ENA]
¡û
>PHG14102038
KC139520
Podoviridae
Salmonella phage FSL SP-076 TN106 (KC139520)
62141
62217
+
Ile
GAT
[ENA]
¡û
Identical group No.452520 (2 seq.)
>PHG14100172
FR682616
Podoviridae
Roseovarius sp. 217 phage 1 phi 2 (FR682616)
71109
71184
+
Ile
GAT
[ENA]
¡û
>PHG14100174
FR719956
Podoviridae
Roseovarius Plymouth podovirus 1 phi 2 (FR719956)
71170
71245
+
Ile
GAT
[ENA]
¡û
Identical group No.504378 (3 seq.)
>PHG183000432
KX098389
Podoviridae
Erwinia phage vB_EamP_Frozen (KX098389)
41112
41187
+
Ile
GAT
[ENA]
¡û
>PHG183000433
KX098390
Podoviridae
Erwinia phage vB_EamP_Rexella (KX098390)
41462
41537
+
Ile
GAT
[ENA]
¡û
>PHG183000434
KX098391
Podoviridae
Erwinia phage vB_EamP_Gutmeister (KX098391)
37135
37210
+
Ile
GAT
[ENA]
¡û
Identical group No.504413 (6 seq.)
>WENV170596912
FUIF01016164
[FUIF] marine metagenome; marine
461
386
-
Ile
GAT
[ENA]
¢þ
>PHG181001867
KT962245
Podoviridae
Cellulophaga phage phi4:1_13 (KT962245)
143233
143308
+
Ile
GAT
[ENA]
¡û
>PHG181001884
KT962246
Podoviridae
Cellulophaga phage phi4:1_18 (KT962246)
143233
143308
+
Ile
GAT
[ENA]
¡û
>PHG181001902
KT962247
Podoviridae
Cellulophaga phage phi17:2_18 (KT962247)
142711
142786
+
Ile
GAT
[ENA]
¡û
>PHG14102300
KC821609
Podoviridae
Cellulophaga phage phi17:2 (KC821609)
142711
142786
+
Ile
GAT
[ENA]
¡û
>PHG14102346
KC821632
Podoviridae
Cellulophaga phage phi4:1 (KC821632)
143233
143308
+
Ile
GAT
[ENA]
¡û
Identical group No.504464 (6 seq.)
>PHG181006836
MG518520
Podoviridae
Streptomyces phage Immanuel3 (MG518520)
16889
16964
+
Ile
GAT
[ENA]
¡û
>PHG181007066
MG663582
Podoviridae
Streptomyces phage HaugeAnator (MG663582)
16885
16960
+
Ile
GAT
[ENA]
¡û
>PHG181007080
MG663583
Podoviridae
Streptomyces phage Percastrophe (MG663583)
16879
16954
+
Ile
GAT
[ENA]
¡û
>PHG181007094
MG663584
Podoviridae
Streptomyces phage Romero (MG663584)
16878
16953
+
Ile
GAT
[ENA]
¡û
>PHG181007108
MG663585
Podoviridae
Streptomyces phage ToriToki (MG663585)
16878
16953
+
Ile
GAT
[ENA]
¡û
>PHG181007122
MG663586
Podoviridae
Streptomyces phage ZooBear (MG663586)
16885
16960
+
Ile
GAT
[ENA]
¡û
Identical group No.506702 (2 seq.)
>PHG183000135
KR054029
Podoviridae
Pseudomonas phage DL54 (KR054029)
888
963
+
Ile
GAT
[ENA]
¡û
>PHG14300455
KF856712
Podoviridae
Pseudomonas phage phiIBB-PAA2 (KF856712)
44586
44511
-
Ile
GAT
[ENA]
¡û
Identical group No.506703 (1 seq.)
>PHG14300452
KF806588
Podoviridae
Erwinia phage Ea9-2 (KF806588)
41253
41328
+
Ile
GAT
[ENA]
¡û
Identical group No.550975 (1 seq.)
>PHG14300099
HQ317387
Podoviridae
Sulfitobacter phage phiCB2047-B (HQ317387)
70011
69938
-
Ile
GAT
[ENA]
¡û
Identical group No.572089 (1 seq.)
>PHG181007529
MG983743
Podoviridae
Xanthomonas phage RiverRider (MG983743)
57869
57794
-
Ile
GAT
[ENA]
¡û
Identical group No.573287 (1 seq.)
>PHG14300491
KJ621082
Podoviridae
Dinoroseobacter phage DFL12phi1 IB4755 (KJ621082)
59304
59229
-
Ile
GAT
[ENA]
¡û
Identical group No.585163 (2 seq.)
>PHG14102302
KC821612
Podoviridae
Cellulophaga phage phi40:1 (KC821612)
35642
35715
+
Ile
GAT
[ENA]
¡û
>PHG14102315
KC821614
Podoviridae
Cellulophaga phage phi38:1 (KC821614)
35644
35717
+
Ile
GAT
[ENA]
¡û
Identical group No.619426 (1 seq.)
>PHG181006807
MG515223
Podoviridae
Streptomyces phage WRightOn (MG515223)
17188
17263
+
Ile
GAT
[ENA]
¡û
Identical group No.619429 (1 seq.)
>PHG181006820
MG518519
Podoviridae
Streptomyces phage Manuel (MG518519)
17090
17165
+
Ile
GAT
[ENA]
¡û
Identical group No.620402 (1 seq.)
>PHG14300021
FJ591094
Podoviridae
Sulfitobacter phage EE36phi1 EE36P1 (FJ591094)
72520
72595
+
Ile
GAT
[ENA]
¡û
Identical group No.652611 (1 seq.)
>PHG183000032
KJ803031
Podoviridae
Dinoroseobacter phage vBDshPR2C (KJ803031)
14807
14882
+
Ile
GAT
[ENA]
¡û
Identical group No.719293 (1 seq.)
>PHG181007827
MH155868
Podoviridae
Streptomyces phage FlowerPower (MH155868)
16854
16928
+
Ile
GAT
[ENA]
¡û
Identical group No.744249 (1 seq.)
>PHG183001535
MH015256
Podoviridae
Ruegeria phage vB_RpoP-V13 (MH015256)
14563
14637
+
Ile
GAT
[ENA]
¡û
Identical group No.755893 (1 seq.)
>PHG181005623
MF431726
Podoviridae
Vibrio phage vB_ValP_IME271 (MF431726)
49408
49334
-
Ile
GAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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