This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Podoviridae
Anticodon = GCA
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.254538 (1 seq.)
>PHG14100629
HQ317387
Podoviridae
Sulfitobacter phage phiCB2047-B (HQ317387)
69338
69415
+
Cys
GCA
[ENA]
¡û
Identical group No.473036 (2 seq.)
>WENV181844918
OGVW01049813
[OGVW] freshwater metagenome; freshwater
210
135
-
Cys
GCA
[ENA]
¢þ
>PHG14100567
HM997019
Podoviridae
Salmonella phage 7-11 beta4 (HM997019)
81685
81610
-
Cys
GCA
[ENA]
¡û
Identical group No.504476 (1 seq.)
>PHG181007391
MG873442
Podoviridae
Salmonella phage SE131 (MG873442)
9547
9622
+
Cys
GCA
[ENA]
¡û
Identical group No.744952 (2 seq.)
>PHG14102281
KC821608
Podoviridae
Cellulophaga phage phi19:3 (KC821608)
67415
67343
-
Cys
GCA
[ENA]
¡û
>PHG14102347
KC821633
Podoviridae
Cellulophaga phage phi13:2 (KC821633)
63457
63385
-
Cys
GCA
[ENA]
¡û
Identical group No.781583 (7 seq.)
>WENV182568318
OJET01000949
[OJET] seawater metagenome; Sea water
1433
1360
-
Cys
GCA
[ENA]
¢þ
>WENV183055530
OLHD01000630
[OLHD] seawater metagenome; Sea water
896
969
+
Cys
GCA
[ENA]
¢þ
>WENV183059867
OLHW01000153
[OLHW] seawater metagenome; Sea water
2961
2888
-
Cys
GCA
[ENA]
¢þ
>WENV183701463
PDMX01055484
[PDMX] marine metagenome; viruses from water sample; < 0.22 micron filtered, nuclease treated
3
76
+
Cys
GCA
[ENA]
¢þ
>WENV170290191
CERZ01011942
[CERZ] marine metagenome genome assembly TARA_082_DCM_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1502
1429
-
Cys
GCA
[ENA]
¢þ
>WENV170828315
MDSY01147156
[MDSY] marine metagenome; seawater
1976
1903
-
Cys
GCA
[ENA]
¢þ
>PHG14102144
KC465901
Podoviridae
Pelagibacter phage HTVC019P Gb1 (KC465901)
9019
8946
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK