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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Podoviridae
Anticodon = GCT
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.22421 (1 seq.)
>PHG181002539
KX098390
Podoviridae
Erwinia phage vB_EamP_Rexella (KX098390)
41883
41974
+
Ser
GCT
[ENA]
¡û
Identical group No.22532 (1 seq.)
>PHG14102646
KF806588
Podoviridae
Erwinia phage Ea9-2 (KF806588)
41689
41780
+
Ser
GCT
[ENA]
¡û
Identical group No.24056 (2 seq.)
>PHG181002533
KX098389
Podoviridae
Erwinia phage vB_EamP_Frozen (KX098389)
41614
41705
+
Ser
GCT
[ENA]
¡û
>PHG181002546
KX098391
Podoviridae
Erwinia phage vB_EamP_Gutmeister (KX098391)
37637
37728
+
Ser
GCT
[ENA]
¡û
Identical group No.30297 (6 seq.)
>PHG181002516
KX077890
Siphoviridae
Streptococcus phage phiLP081102 (KX077890)
22603
22516
-
Ser
GCT
[ENA]
¡û
>PHG14102140
KC413987
Podoviridae
Streptococcus phage phiSS12 Gb1 (KC413987)
21729
21642
-
Ser
GCT
[ENA]
¡û
>W1510093950
CEGV01000015
Bacillota
Streptococcus suis S99Z [CEGV]
159821
159908
+
Ser
GCT
[ENA]
¡û
>C121002756
CP002640
Bacillota
Streptococcus suis SS12 [CP002640]
1467007
1466920
-
Ser
GCT
[Ensembl]
¡û
>W1610404531
FIMD01000001
Bacillota
Streptococcus suis [FIMD]
289113
289200
+
Ser
GCT
[ENA]
¡û
>W1710404298
FIMD01000001
Bacillota
Streptococcus suis [FIMD]
289113
289200
+
Ser
GCT
[ENA]
¡û
Identical group No.52371 (3 seq.)
>PHG181001866
KT962245
Podoviridae
Cellulophaga phage phi4:1_13 (KT962245)
90280
90367
+
Ser
GCT
[ENA]
¡û
>PHG181001883
KT962246
Podoviridae
Cellulophaga phage phi4:1_18 (KT962246)
90280
90367
+
Ser
GCT
[ENA]
¡û
>PHG14102345
KC821632
Podoviridae
Cellulophaga phage phi4:1 (KC821632)
90280
90367
+
Ser
GCT
[ENA]
¡û
Identical group No.56413 (2 seq.)
>PHG181001900
KT962247
Podoviridae
Cellulophaga phage phi17:2_18 (KT962247)
90546
90633
+
Ser
GCT
[ENA]
¡û
>PHG14102298
KC821609
Podoviridae
Cellulophaga phage phi17:2 (KC821609)
90546
90633
+
Ser
GCT
[ENA]
¡û
Identical group No.60044 (1 seq.)
>PHG14102807
KJ192399
Podoviridae
Vibrio phage CHOED TahiMoana (KJ192399)
55939
56028
+
Ser
GCT
[ENA]
¡û
Identical group No.159102 (3 seq.)
>WENV181190749
OEPS010002196
[OEPS] soil metagenome; soil
5027
4942
-
Ser
GCT
[ENA]
¢þ
>PHG14102027
KC139517
Podoviridae
Salmonella phage FSL SP-058 TN106 (KC139517)
66960
67045
+
Ser
GCT
[ENA]
¡û
>PHG14102036
KC139520
Podoviridae
Salmonella phage FSL SP-076 TN106 (KC139520)
61829
61914
+
Ser
GCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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