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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Podoviridae
Anticodon = GTC
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.421683 (1 seq.)
>PHG181006821
MG518519
Podoviridae
Streptomyces phage Manuel (MG518519)
17169
17243
+
Asp
GTC
[ENA]
¡û
Identical group No.504393 (3 seq.)
>PHG181000856
KP233880
Podoviridae
Pseudomonas phage PhiCHU (KP233880)
44809
44734
-
Asp
GTC
[ENA]
¡û
>PHG14100449
HF543949
Podoviridae
Pseudomonas phage vB_PaeP_p2-10_Or1 vB_PaeM_C2-10_Ab1 (HF543949)
633
708
+
Asp
GTC
[ENA]
¡û
>PHG14101102
JN254801
Podoviridae
Pseudomonas phage MR299-2 Sebata (JN254801)
1685
1760
+
Asp
GTC
[ENA]
¡û
Identical group No.504411 (5 seq.)
>PHG181001861
KT962245
Podoviridae
Cellulophaga phage phi4:1_13 (KT962245)
89097
89170
+
Asp
GTC
[ENA]
¡û
>PHG181001878
KT962246
Podoviridae
Cellulophaga phage phi4:1_18 (KT962246)
89097
89170
+
Asp
GTC
[ENA]
¡û
>PHG181001895
KT962247
Podoviridae
Cellulophaga phage phi17:2_18 (KT962247)
89363
89436
+
Asp
GTC
[ENA]
¡û
>PHG14102293
KC821609
Podoviridae
Cellulophaga phage phi17:2 (KC821609)
89363
89436
+
Asp
GTC
[ENA]
¡û
>PHG14102340
KC821632
Podoviridae
Cellulophaga phage phi4:1 (KC821632)
89097
89170
+
Asp
GTC
[ENA]
¡û
Identical group No.504465 (6 seq.)
>PHG181006837
MG518520
Podoviridae
Streptomyces phage Immanuel3 (MG518520)
17026
17101
+
Asp
GTC
[ENA]
¡û
>PHG181007067
MG663582
Podoviridae
Streptomyces phage HaugeAnator (MG663582)
17022
17097
+
Asp
GTC
[ENA]
¡û
>PHG181007081
MG663583
Podoviridae
Streptomyces phage Percastrophe (MG663583)
17016
17091
+
Asp
GTC
[ENA]
¡û
>PHG181007095
MG663584
Podoviridae
Streptomyces phage Romero (MG663584)
17015
17090
+
Asp
GTC
[ENA]
¡û
>PHG181007109
MG663585
Podoviridae
Streptomyces phage ToriToki (MG663585)
17015
17090
+
Asp
GTC
[ENA]
¡û
>PHG181007123
MG663586
Podoviridae
Streptomyces phage ZooBear (MG663586)
17022
17097
+
Asp
GTC
[ENA]
¡û
Identical group No.506674 (1 seq.)
>PHG14100437
HE983844
Podoviridae
Pseudomonas phage vB_PaeP_C1-14_Or (HE983844)
633
708
+
Asp
GTC
[ENA]
¡û
Identical group No.506695 (3 seq.)
>PHG181002530
KX098389
Podoviridae
Erwinia phage vB_EamP_Frozen (KX098389)
41033
41108
+
Asp
GTC
[ENA]
¡û
>PHG181002543
KX098391
Podoviridae
Erwinia phage vB_EamP_Gutmeister (KX098391)
37056
37131
+
Asp
GTC
[ENA]
¡û
>PHG14102644
KF806588
Podoviridae
Erwinia phage Ea9-2 (KF806588)
41174
41249
+
Asp
GTC
[ENA]
¡û
Identical group No.506698 (2 seq.)
>PHG181001200
KR054029
Podoviridae
Pseudomonas phage DL54 (KR054029)
968
1043
+
Asp
GTC
[ENA]
¡û
>PHG14102659
KF856712
Podoviridae
Pseudomonas phage phiIBB-PAA2 (KF856712)
44506
44431
-
Asp
GTC
[ENA]
¡û
Identical group No.619427 (1 seq.)
>PHG181006808
MG515223
Podoviridae
Streptomyces phage WRightOn (MG515223)
17267
17340
+
Asp
GTC
[ENA]
¡û
Identical group No.629531 (1 seq.)
>PHG0100200
AY078382
Podoviridae
Pseudomonas virus PaP3 (AY078382)
1708
1783
+
Asp
GTC
[ENA]
¡û
Identical group No.684233 (1 seq.)
>PHG181002537
KX098390
Podoviridae
Erwinia phage vB_EamP_Rexella (KX098390)
41384
41458
+
Asp
GTC
[ENA]
¡û
Identical group No.719294 (1 seq.)
>PHG181007828
MH155868
Podoviridae
Streptomyces phage FlowerPower (MH155868)
16932
17004
+
Asp
GTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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