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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Podoviridae
Anticodon = TAA
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.159104 (3 seq.)
>WENV181190756
OEPS010002196
[OEPS] soil metagenome; soil
3909
3824
-
Leu
TAA
[ENA]
¢þ
>PHG14102032
KC139517
Podoviridae
Salmonella phage FSL SP-058 TN106 (KC139517)
68237
68322
+
Leu
TAA
[ENA]
¡û
>PHG14102041
KC139520
Podoviridae
Salmonella phage FSL SP-076 TN106 (KC139520)
63106
63191
+
Leu
TAA
[ENA]
¡û
Identical group No.170654 (2 seq.)
>PHG14102310
KC821612
Podoviridae
Cellulophaga phage phi40:1 (KC821612)
38627
38710
+
Leu
TAA
[ENA]
¡û
>PHG14102323
KC821614
Podoviridae
Cellulophaga phage phi38:1 (KC821614)
38631
38714
+
Leu
TAA
[ENA]
¡û
Identical group No.205127 (1 seq.)
>PHG14103099
KM236242
Podoviridae
Escherichia phage Pollock LIKBL0011 (KM236242)
64918
65002
+
Leu
TAA
[ENA]
¡û
Identical group No.208437 (1 seq.)
>PHG14100847
JF412296
Podoviridae
EBPR podovirus 3 PAS-1 (JF412296)
35307
35225
-
Leu
TAA
[ENA]
¡û
Identical group No.220539 (3 seq.)
>PHG181001856
KT962245
Podoviridae
Cellulophaga phage phi4:1_13 (KT962245)
87785
87866
+
Leu
TAA
[ENA]
¡û
>PHG181001873
KT962246
Podoviridae
Cellulophaga phage phi4:1_18 (KT962246)
87785
87866
+
Leu
TAA
[ENA]
¡û
>PHG14102334
KC821632
Podoviridae
Cellulophaga phage phi4:1 (KC821632)
87785
87866
+
Leu
TAA
[ENA]
¡û
Identical group No.222206 (2 seq.)
>PHG181001890
KT962247
Podoviridae
Cellulophaga phage phi17:2_18 (KT962247)
88238
88319
+
Leu
TAA
[ENA]
¡û
>PHG14102287
KC821609
Podoviridae
Cellulophaga phage phi17:2 (KC821609)
88238
88319
+
Leu
TAA
[ENA]
¡û
Identical group No.388329 (2 seq.)
>PHG181002025
KU356690
Podoviridae
Pseudomonas phage ZC03 (KU356690)
43505
43581
+
Leu
TAA
[ENA]
¡û
>PHG181002033
KU356691
Podoviridae
Pseudomonas phage ZC08 (KU356691)
43616
43692
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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