This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Podoviridae
Anticodon = TAG
HIT:
13 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.178195 (1 seq.)
>PHG14103063
KM199771
Podoviridae
Mesorhizobium phage vB_MloP_Lo5R7ANS LIKBL0011 (KM199771)
8569
8654
+
Leu
TAG
[ENA]
¡û
Identical group No.184093 (8 seq.)
>WENV182552120
OJCJ01008045
[OJCJ] seawater metagenome; Sea water
272
356
+
Leu
TAG
[ENA]
¢þ
>WENV182553534
OJCR01009945
[OJCR] seawater metagenome; Sea water
996
912
-
Leu
TAG
[ENA]
¢þ
>WENV182557354
OJDI01011741
[OJDI] seawater metagenome; Sea water
571
487
-
Leu
TAG
[ENA]
¢þ
>WENV182572318
OJFL01003158
[OJFL] seawater metagenome; Sea water
129
213
+
Leu
TAG
[ENA]
¢þ
>WENV182573667
OJFP01010775
[OJFP] seawater metagenome; Sea water
894
810
-
Leu
TAG
[ENA]
¢þ
>WENV182576410
OJFX01020162
[OJFX] seawater metagenome; Sea water
523
439
-
Leu
TAG
[ENA]
¢þ
>WENV183060730
OLHY01003078
[OLHY] seawater metagenome; Sea water
1190
1106
-
Leu
TAG
[ENA]
¢þ
>PHG14102143
KC465900
Podoviridae
Pelagibacter phage HTVC011P Gb1 (KC465900)
5592
5676
+
Leu
TAG
[ENA]
¡û
Identical group No.193917 (3 seq.)
>C171115114
CP021030
Alphaproteobacteria
Rhizobium sp. NXC14 [CP021030]
2006027
2005943
-
Leu
TAG
-
¡û
>PHG14101940
JX483873
Podoviridae
Rhizobium phage RHEph01 S-CAM20 (JX483873)
3706
3622
-
Leu
TAG
[ENA]
¡û
>W1710505181
FMTM01000008
Alphaproteobacteria
Rhizobium mongolense loessense [FMTM]
192120
192204
+
Leu
TAG
[ENA]
¡û
Identical group No.224657 (1 seq.)
>PHG181002030
KU356691
Podoviridae
Pseudomonas phage ZC08 (KU356691)
43353
43436
+
Leu
TAG
[ENA]
¡û
Identical group No.225768 (1 seq.)
>PHG181002022
KU356690
Podoviridae
Pseudomonas phage ZC03 (KU356690)
43243
43326
+
Leu
TAG
[ENA]
¡û
Identical group No.247531 (3 seq.)
>PHG181001855
KT962245
Podoviridae
Cellulophaga phage phi4:1_13 (KT962245)
87703
87778
+
Leu
TAG
[ENA]
¡û
>PHG181001872
KT962246
Podoviridae
Cellulophaga phage phi4:1_18 (KT962246)
87703
87778
+
Leu
TAG
[ENA]
¡û
>PHG14102333
KC821632
Podoviridae
Cellulophaga phage phi4:1 (KC821632)
87703
87778
+
Leu
TAG
[ENA]
¡û
Identical group No.247547 (6 seq.)
>PHG181006838
MG518520
Podoviridae
Streptomyces phage Immanuel3 (MG518520)
17103
17178
+
Leu
TAG
[ENA]
¡û
>PHG181007068
MG663582
Podoviridae
Streptomyces phage HaugeAnator (MG663582)
17099
17174
+
Leu
TAG
[ENA]
¡û
>PHG181007082
MG663583
Podoviridae
Streptomyces phage Percastrophe (MG663583)
17093
17168
+
Leu
TAG
[ENA]
¡û
>PHG181007096
MG663584
Podoviridae
Streptomyces phage Romero (MG663584)
17092
17167
+
Leu
TAG
[ENA]
¡û
>PHG181007110
MG663585
Podoviridae
Streptomyces phage ToriToki (MG663585)
17092
17167
+
Leu
TAG
[ENA]
¡û
>PHG181007124
MG663586
Podoviridae
Streptomyces phage ZooBear (MG663586)
17099
17174
+
Leu
TAG
[ENA]
¡û
Identical group No.252355 (2 seq.)
>PHG181001889
KT962247
Podoviridae
Cellulophaga phage phi17:2_18 (KT962247)
88156
88231
+
Leu
TAG
[ENA]
¡û
>PHG14102286
KC821609
Podoviridae
Cellulophaga phage phi17:2 (KC821609)
88156
88231
+
Leu
TAG
[ENA]
¡û
Identical group No.254537 (1 seq.)
>PHG14100627
HQ317387
Podoviridae
Sulfitobacter phage phiCB2047-B (HQ317387)
68962
69039
+
Leu
TAG
[ENA]
¡û
Identical group No.370724 (1 seq.)
>PHG181007829
MH155868
Podoviridae
Streptomyces phage FlowerPower (MH155868)
17026
17100
+
Leu
TAG
[ENA]
¡û
Identical group No.421681 (1 seq.)
>PHG181006809
MG515223
Podoviridae
Streptomyces phage WRightOn (MG515223)
17585
17659
+
Leu
TAG
[ENA]
¡û
Identical group No.421684 (1 seq.)
>PHG181006822
MG518519
Podoviridae
Streptomyces phage Manuel (MG518519)
17278
17354
+
Leu
TAG
[ENA]
¡û
Identical group No.428309 (1 seq.)
>PHG181006899
MG592578
Podoviridae
Vibrio phage 1.208.B._10N.222.52.A7 (MG592578)
1354
1430
+
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK