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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Podoviridae
Anticodon = TGA
HIT:
11 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.52373 (1 seq.)
>PHG181007394
MG873442
Podoviridae
Salmonella phage SE131 (MG873442)
88416
88327
-
Ser
TGA
[ENA]
¡û
Identical group No.58392 (1 seq.)
>PHG14101223
JN662425
Podoviridae
Burkholderia virus DC1 G (JN662425)
8262
8351
+
Ser
TGA
[ENA]
¡û
Identical group No.60272 (4 seq.)
>WENV181367259
OFPX01000307
[OFPX] freshwater metagenome; Freshwater Lake
375
286
-
Ser
TGA
[ENA]
¢þ
>WENV181368506
OFQL01013022
[OFQL] freshwater metagenome; Freshwater Lake
480
569
+
Ser
TGA
[ENA]
¢þ
>PHG0200044
EF056009
Podoviridae
Escherichia virus N4 2526H5FR (EF056009)
32531
32620
+
Ser
TGA
[ENA]
¡û
>PHG181007274
MG770228
Podoviridae
Escherichia phage PMBT57 (MG770228)
7653
7742
+
Ser
TGA
[ENA]
¡û
Identical group No.61180 (5 seq.)
>PHG181007561
MH015250
Podoviridae
Ruegeria phage vB_RpoP-V12 (MH015250)
73699
73788
+
Ser
TGA
[ENA]
¡û
>PHG181007563
MH015253
Podoviridae
Ruegeria phage vB_RpoP-V21 (MH015253)
73689
73778
+
Ser
TGA
[ENA]
¡û
>PHG181007591
MH015257
Podoviridae
Ruegeria phage vB_RpoP-V14 (MH015257)
73797
73886
+
Ser
TGA
[ENA]
¡û
>PHG181007593
MH015259
Podoviridae
Ruegeria phage vB_RpoP-V17 (MH015259)
73689
73778
+
Ser
TGA
[ENA]
¡û
>PHG14100100
FJ591093
Podoviridae
Silicibacter phage DSS3phi2 DSS3P2 (FJ591093)
73770
73859
+
Ser
TGA
[ENA]
¡û
Identical group No.64163 (1 seq.)
>PHG14100128
FJ937737
Podoviridae
Burkholderia virus Bcepil02 mb (FJ937737)
7204
7293
+
Ser
TGA
[ENA]
¡û
Identical group No.67627 (1 seq.)
>PHG181008699
MH638294
Podoviridae
Ralstonia phage GP4 (MH638294)
25291
25202
-
Ser
TGA
[ENA]
¡û
Identical group No.67780 (1 seq.)
>PHG14100102
FJ591094
Podoviridae
Sulfitobacter phage EE36phi1 EE36P1 (FJ591094)
72598
72687
+
Ser
TGA
[ENA]
¡û
Identical group No.82827 (1 seq.)
>PHG0200023
AY349011
Podoviridae
Burkholderia virus Bcep22 T2L (AY349011)
8349
8437
+
Ser
TGA
[ENA]
¡û
Identical group No.101933 (1 seq.)
>PHG14101770
JX104231
Podoviridae
Burkholderia virus Bcepmigl Lu11 (JX104231)
7811
7898
+
Ser
TGA
[ENA]
¡û
Identical group No.102973 (1 seq.)
>PHG181002031
KU356691
Podoviridae
Pseudomonas phage ZC08 (KU356691)
43442
43529
+
Ser
TGA
[ENA]
¡û
Identical group No.142688 (1 seq.)
>PHG181002023
KU356690
Podoviridae
Pseudomonas phage ZC03 (KU356690)
43332
43418
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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