This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Podoviridae
Anticodon = TGG
HIT:
28 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.236138 (5 seq.)
>PHG181001851
KT962245
Podoviridae
Cellulophaga phage phi4:1_13 (KT962245)
87196
87272
+
Pro
TGG
[ENA]
¡û
>PHG181001868
KT962246
Podoviridae
Cellulophaga phage phi4:1_18 (KT962246)
87196
87272
+
Pro
TGG
[ENA]
¡û
>PHG181001885
KT962247
Podoviridae
Cellulophaga phage phi17:2_18 (KT962247)
87649
87725
+
Pro
TGG
[ENA]
¡û
>PHG14102282
KC821609
Podoviridae
Cellulophaga phage phi17:2 (KC821609)
87649
87725
+
Pro
TGG
[ENA]
¡û
>PHG14102329
KC821632
Podoviridae
Cellulophaga phage phi4:1 (KC821632)
87196
87272
+
Pro
TGG
[ENA]
¡û
Identical group No.247528 (5 seq.)
>PHG0100201
AY078382
Podoviridae
Pseudomonas virus PaP3 (AY078382)
1880
1955
+
Pro
TGG
[ENA]
¡û
>PHG181000857
KP233880
Podoviridae
Pseudomonas phage PhiCHU (KP233880)
44729
44654
-
Pro
TGG
[ENA]
¡û
>PHG14100438
HE983844
Podoviridae
Pseudomonas phage vB_PaeP_C1-14_Or (HE983844)
713
788
+
Pro
TGG
[ENA]
¡û
>PHG14100450
HF543949
Podoviridae
Pseudomonas phage vB_PaeP_p2-10_Or1 vB_PaeM_C2-10_Ab1 (HF543949)
713
787
+
Pro
TGG
[ENA]
¡û
>PHG14101103
JN254801
Podoviridae
Pseudomonas phage MR299-2 Sebata (JN254801)
1765
1840
+
Pro
TGG
[ENA]
¡û
Identical group No.257956 (1 seq.)
>PHG14103004
KJ621082
Podoviridae
Dinoroseobacter phage DFL12phi1 IB4755 (KJ621082)
59225
59148
-
Pro
TGG
[ENA]
¡û
Identical group No.300066 (6 seq.)
>PHG0100180
AM910650
Podoviridae
Pseudomonas virus LUZ24 ATCC 11303-B5 (AM910650)
44679
44603
-
Pro
TGG
[ENA]
¡û
>PHG181001201
KR054029
Podoviridae
Pseudomonas phage DL54 (KR054029)
1048
1124
+
Pro
TGG
[ENA]
¡û
>PHG181006048
MF768469
Podoviridae
Pseudomonas phage SL4 (MF768469)
35550
35626
+
Pro
TGG
[ENA]
¡û
>PHG14100452
HG518155
Podoviridae
Pseudomonas phage TL das13 (HG518155)
44717
44641
-
Pro
TGG
[ENA]
¡û
>PHG14102660
KF856712
Podoviridae
Pseudomonas phage phiIBB-PAA2 (KF856712)
44426
44350
-
Pro
TGG
[ENA]
¡û
>PHG14103393
LN610578
Podoviridae
Pseudomonas phage vB_PaeP_C2-10_Ab22 (LN610578)
44888
44812
-
Pro
TGG
[ENA]
¡û
Identical group No.315583 (3 seq.)
>WENV170005129
AKYZ01002381
[AKYZ] insect gut metagenome;
99
175
+
Pro
TGG
[ENA]
¢þ
>WENV170005158
AKZA01001883
[AKZA] insect gut metagenome;
37820
37896
+
Pro
TGG
[ENA]
¢þ
>PHG181007395
MG873442
Podoviridae
Salmonella phage SE131 (MG873442)
88321
88245
-
Pro
TGG
[ENA]
¡û
Identical group No.335784 (6 seq.)
>PHG181006888
MG592536
Podoviridae
Vibrio phage 1.169.O._10N.261.52.B1 (MG592536)
12094
12170
+
Pro
TGG
[ENA]
¡û
>PHG181006894
MG592554
Podoviridae
Vibrio phage 1.188.A._10N.286.51.A6 (MG592554)
6548
6472
-
Pro
TGG
[ENA]
¡û
>PHG181006895
MG592555
Podoviridae
Vibrio phage 1.188.B._10N.286.51.A6 (MG592555)
6550
6474
-
Pro
TGG
[ENA]
¡û
>PHG181006896
MG592556
Podoviridae
Vibrio phage 1.188.C._10N.286.51.A6 (MG592556)
6550
6474
-
Pro
TGG
[ENA]
¡û
>PHG181006901
MG592591
Podoviridae
Vibrio phage 1.224.A._10N.261.48.B1 (MG592591)
6814
6738
-
Pro
TGG
[ENA]
¡û
>PHG181006913
MG592625
Podoviridae
Vibrio phage 1.261.O._10N.286.51.A7 (MG592625)
6381
6305
-
Pro
TGG
[ENA]
¡û
Identical group No.347529 (2 seq.)
>PHG181002532
KX098389
Podoviridae
Erwinia phage vB_EamP_Frozen (KX098389)
41532
41608
+
Pro
TGG
[ENA]
¡û
>PHG181002545
KX098391
Podoviridae
Erwinia phage vB_EamP_Gutmeister (KX098391)
37555
37631
+
Pro
TGG
[ENA]
¡û
Identical group No.373419 (1 seq.)
>PHG0100490
EF056009
Podoviridae
Escherichia virus N4 2526H5FR (EF056009)
33054
33130
+
Pro
TGG
[ENA]
¡û
Identical group No.379894 (1 seq.)
>PHG181007531
MG983743
Podoviridae
Xanthomonas phage RiverRider (MG983743)
57526
57450
-
Pro
TGG
[ENA]
¡û
Identical group No.379895 (5 seq.)
>PHG181007560
MH015250
Podoviridae
Ruegeria phage vB_RpoP-V12 (MH015250)
73539
73615
+
Pro
TGG
[ENA]
¡û
>PHG181007562
MH015253
Podoviridae
Ruegeria phage vB_RpoP-V21 (MH015253)
73529
73605
+
Pro
TGG
[ENA]
¡û
>PHG181007590
MH015257
Podoviridae
Ruegeria phage vB_RpoP-V14 (MH015257)
73637
73713
+
Pro
TGG
[ENA]
¡û
>PHG181007592
MH015259
Podoviridae
Ruegeria phage vB_RpoP-V17 (MH015259)
73529
73605
+
Pro
TGG
[ENA]
¡û
>PHG14100099
FJ591093
Podoviridae
Silicibacter phage DSS3phi2 DSS3P2 (FJ591093)
73610
73686
+
Pro
TGG
[ENA]
¡û
Identical group No.391405 (2 seq.)
>PHG181005622
MF431726
Podoviridae
Vibrio phage vB_ValP_IME271 (MF431726)
49493
49417
-
Pro
TGG
[ENA]
¡û
>PHG14103036
KJ936628
Podoviridae
Vibrio phage VPp1 IB4755 (KJ936628)
29866
29790
-
Pro
TGG
[ENA]
¡û
Identical group No.391408 (1 seq.)
>PHG14103096
KM236242
Podoviridae
Escherichia phage Pollock LIKBL0011 (KM236242)
64673
64749
+
Pro
TGG
[ENA]
¡û
Identical group No.398754 (2 seq.)
>PHG14102025
KC139517
Podoviridae
Salmonella phage FSL SP-058 TN106 (KC139517)
66787
66863
+
Pro
TGG
[ENA]
¡û
>PHG14102034
KC139520
Podoviridae
Salmonella phage FSL SP-076 TN106 (KC139520)
61656
61732
+
Pro
TGG
[ENA]
¡û
Identical group No.406227 (1 seq.)
>PHG181007276
MG770228
Podoviridae
Escherichia phage PMBT57 (MG770228)
8175
8251
+
Pro
TGG
[ENA]
¡û
Identical group No.406228 (1 seq.)
>PHG181007587
MH015256
Podoviridae
Ruegeria phage vB_RpoP-V13 (MH015256)
14485
14561
+
Pro
TGG
[ENA]
¡û
Identical group No.415246 (1 seq.)
>PHG14101443
JQ011318
Podoviridae
Escherichia phage TL-2011c vB_EcoS_MSHS1210 (JQ011318)
24180
24256
+
Pro
TGG
[ENA]
¡û
Identical group No.422487 (1 seq.)
>PHG14100101
FJ591094
Podoviridae
Sulfitobacter phage EE36phi1 EE36P1 (FJ591094)
72437
72513
+
Pro
TGG
[ENA]
¡û
Identical group No.429068 (1 seq.)
>PHG14100768
HQ641380
Podoviridae
Enterobacter phage EcP1 VBP32 (HQ641380)
55547
55623
+
Pro
TGG
[ENA]
¡û
Identical group No.438754 (1 seq.)
>PHG181007401
MG922974
Podoviridae
Klebsiella phage KP8 (MG922974)
34744
34820
+
Pro
TGG
[ENA]
¡û
Identical group No.450680 (1 seq.)
>PHG181000725
KJ803031
Podoviridae
Dinoroseobacter phage vBDshPR2C (KJ803031)
14886
14962
+
Pro
TGG
[ENA]
¡û
Identical group No.452521 (2 seq.)
>PHG14100171
FR682616
Podoviridae
Roseovarius sp. 217 phage 1 phi 2 (FR682616)
71029
71104
+
Pro
TGG
[ENA]
¡û
>PHG14100173
FR719956
Podoviridae
Roseovarius Plymouth podovirus 1 phi 2 (FR719956)
71090
71165
+
Pro
TGG
[ENA]
¡û
Identical group No.550958 (1 seq.)
>PHG14100631
HQ317387
Podoviridae
Sulfitobacter phage phiCB2047-B (HQ317387)
70183
70108
-
Pro
TGG
[ENA]
¡û
Identical group No.627262 (1 seq.)
>PHG181008358
MH518298
Podoviridae
Pseudomonas phage SCYZ1 (MH518298)
18633
18708
+
Pro
TGG
[ENA]
¡û
Identical group No.731941 (2 seq.)
>PHG181002021
KU356690
Podoviridae
Pseudomonas phage ZC03 (KU356690)
42690
42764
+
Pro
TGG
[ENA]
¡û
>PHG181002029
KU356691
Podoviridae
Pseudomonas phage ZC08 (KU356691)
42844
42918
+
Pro
TGG
[ENA]
¡û
Identical group No.793254 (6 seq.)
>PHG181006831
MG518520
Podoviridae
Streptomyces phage Immanuel3 (MG518520)
16039
16111
+
Pro
TGG
[ENA]
¡û
>PHG181007061
MG663582
Podoviridae
Streptomyces phage HaugeAnator (MG663582)
16035
16107
+
Pro
TGG
[ENA]
¡û
>PHG181007075
MG663583
Podoviridae
Streptomyces phage Percastrophe (MG663583)
16028
16100
+
Pro
TGG
[ENA]
¡û
>PHG181007089
MG663584
Podoviridae
Streptomyces phage Romero (MG663584)
16028
16100
+
Pro
TGG
[ENA]
¡û
>PHG181007103
MG663585
Podoviridae
Streptomyces phage ToriToki (MG663585)
16028
16100
+
Pro
TGG
[ENA]
¡û
>PHG181007117
MG663586
Podoviridae
Streptomyces phage ZooBear (MG663586)
16035
16107
+
Pro
TGG
[ENA]
¡û
Identical group No.808962 (1 seq.)
>PHG181007824
MH155868
Podoviridae
Streptomyces phage FlowerPower (MH155868)
15986
16057
+
Pro
TGG
[ENA]
¡û
Identical group No.825946 (1 seq.)
>PHG181006803
MG515223
Podoviridae
Streptomyces phage WRightOn (MG515223)
16390
16461
+
Pro
TGG
[ENA]
¡û
Identical group No.825949 (1 seq.)
>PHG181006817
MG518519
Podoviridae
Streptomyces phage Manuel (MG518519)
16464
16535
+
Pro
TGG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK