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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Podoviridae
Anticodon = TTT
HIT:
7 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.318924 (3 seq.)
>PHG181002534
KX098389
Podoviridae
Erwinia phage vB_EamP_Frozen (KX098389)
41711
41787
+
Lys
TTT
[ENA]
¡û
>PHG181002540
KX098390
Podoviridae
Erwinia phage vB_EamP_Rexella (KX098390)
41980
42056
+
Lys
TTT
[ENA]
¡û
>PHG181002547
KX098391
Podoviridae
Erwinia phage vB_EamP_Gutmeister (KX098391)
37734
37810
+
Lys
TTT
[ENA]
¡û
Identical group No.320902 (1 seq.)
>PHG14102647
KF806588
Podoviridae
Erwinia phage Ea9-2 (KF806588)
41786
41862
+
Lys
TTT
[ENA]
¡û
Identical group No.360758 (1 seq.)
>PHG14100632
HQ317387
Podoviridae
Sulfitobacter phage phiCB2047-B (HQ317387)
69925
69849
-
Lys
TTT
[ENA]
¡û
Identical group No.398755 (2 seq.)
>PHG14102024
KC139517
Podoviridae
Salmonella phage FSL SP-058 TN106 (KC139517)
66706
66782
+
Lys
TTT
[ENA]
¡û
>PHG14102033
KC139520
Podoviridae
Salmonella phage FSL SP-076 TN106 (KC139520)
61575
61651
+
Lys
TTT
[ENA]
¡û
Identical group No.585164 (2 seq.)
>PHG14102301
KC821612
Podoviridae
Cellulophaga phage phi40:1 (KC821612)
35520
35593
+
Lys
TTT
[ENA]
¡û
>PHG14102314
KC821614
Podoviridae
Cellulophaga phage phi38:1 (KC821614)
35522
35595
+
Lys
TTT
[ENA]
¡û
Identical group No.658336 (1 seq.)
>PHG0300005
AF157835
Podoviridae
Hamiltonella virus APSE1 ECOR-9 (AF157835)
32824
32898
+
Lys
TTT
[ENA]
¡û
Identical group No.687828 (3 seq.)
>PHG0300075
DQ092614
Podoviridae
Bacteriophage APSE-2 T4dC-46 (DQ092614)
2529
2603
+
Lys
TTT
[ENA]
¡û
>PHG0300099
EU794049
Podoviridae
Bacteriophage APSE-2 PAD42 (EU794049)
36173
36247
+
Lys
TTT
[ENA]
¡û
>C09300059
CP001277
Gammaproteobacteria
Candidatus Hamiltonella defensa 5AT [Acyrthosiphon pisum] T5A [CP001277]
1509291
1509365
+
Lys
TTT
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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