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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Pru Toh Daeng peat swamp (SRP001114)
Anticodon = ACG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.391569 (1 seq.)
>SRA1014005
SRR023821.36122
Pru Toh Daeng peat swamp (SRP001114)
166
90
-
Arg
ACG
[SRA]
Identical group No.391572 (1 seq.)
>SRA1014021
SRR023821.42891
Pru Toh Daeng peat swamp (SRP001114)
142
66
-
Arg
ACG
[SRA]
Identical group No.391576 (2 seq.)
>W141564291
JIAQ01000014
Acidobacteriota
Acidobacteriaceae bacterium URHE0068 [JIAQ]
21994
22070
+
Arg
ACG
[ENA]
¡û
>SRA1014043
SRR023821.50151
Pru Toh Daeng peat swamp (SRP001114)
145
69
-
Arg
ACG
[SRA]
Identical group No.593611 (1 seq.)
>SRA1013942
SRR023820.77917
Pru Toh Daeng peat swamp (SRP001114)
214
140
-
Arg
ACG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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