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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Pru Toh Daeng peat swamp (SRP001114)
Anticodon = CAA
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.103396 (2 seq.)
>SRA1014022
SRR023821.43027
Pru Toh Daeng peat swamp (SRP001114)
164
251
+
Leu
CAA
[SRA]
>SRA1014042
SRR023821.50050
Pru Toh Daeng peat swamp (SRP001114)
164
251
+
Leu
CAA
[SRA]
Identical group No.115748 (3 seq.)
>WENV181286615
OFGW01011096
[OFGW] soil metagenome; Clay
177
91
-
Leu
CAA
[ENA]
¢þ
>W1910731390
MHEM01000076
Nitrospirota
Nitrospirae bacterium RBG_19FT_COMBO_55_12 [MHEM]
2341
2427
+
Leu
CAA
[ENA]
¡û
>SRA1014078
SRR023821.86490
Pru Toh Daeng peat swamp (SRP001114)
86
1
-
Leu
CAA
[SRA]
Identical group No.136904 (1 seq.)
>SRA1013901
SRR023819.713
Pru Toh Daeng peat swamp (SRP001114)
36
122
+
Leu
CAA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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