This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Pru Toh Daeng peat swamp (SRP001114)
Anticodon = CAC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.398829 (2 seq.)
>SRA1013920
SRR023820.37033
Pru Toh Daeng peat swamp (SRP001114)
82
156
+
Val
CAC
[SRA]
>SRA1013940
SRR023820.69310
Pru Toh Daeng peat swamp (SRP001114)
82
156
+
Val
CAC
[SRA]
Identical group No.458631 (18 seq.)
>W1711576134
MNKN01000085
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_2_60_10 [MNKN]
10784
10859
+
Val
CAC
[ENA]
¡û
>WENV180249049
OBEQ010164917
[OBEQ] groundwater metagenome; groundwater
481
556
+
Val
CAC
[ENA]
¢þ
>WENV180252627
OBEQ010464701
[OBEQ] groundwater metagenome; groundwater
6394
6469
+
Val
CAC
[ENA]
¢þ
>WENV180262536
OBEQ011395737
[OBEQ] groundwater metagenome; groundwater
1508
1583
+
Val
CAC
[ENA]
¢þ
>WENV180294855
OBIZ01001581
[OBIZ] soil metagenome; soil
1241
1166
-
Val
CAC
[ENA]
¢þ
>WENV180320707
OBKQ01010036
[OBKQ] soil metagenome; Clay
384
309
-
Val
CAC
[ENA]
¢þ
>WENV180342915
OBLJ01191875
[OBLJ] soil metagenome; Clay
223
148
-
Val
CAC
[ENA]
¢þ
>WENV180343680
OBLK01062178
[OBLK] soil metagenome; Clay
116
191
+
Val
CAC
[ENA]
¢þ
>WENV180350252
OBLQ010000036
[OBLQ] soil metagenome; soil
35189
35114
-
Val
CAC
[ENA]
¢þ
>WENV181286002
OFGU01018409
[OFGU] soil metagenome; Clay
436
511
+
Val
CAC
[ENA]
¢þ
>WENV181286607
OFGW01010203
[OFGW] soil metagenome; Clay
998
923
-
Val
CAC
[ENA]
¢þ
>WENV181291953
OFHD01013579
[OFHD] soil metagenome; Clay
461
386
-
Val
CAC
[ENA]
¢þ
>WENV181292866
OFHF01031743
[OFHF] soil metagenome; Clay
602
677
+
Val
CAC
[ENA]
¢þ
>WENV181293326
OFHG01001446
[OFHG] soil metagenome; Clay
690
615
-
Val
CAC
[ENA]
¢þ
>WENV181294562
OFHH01010151
[OFHH] soil metagenome; Clay
606
681
+
Val
CAC
[ENA]
¢þ
>WENV181297448
OFHK01046020
[OFHK] soil metagenome; Clay
290
215
-
Val
CAC
[ENA]
¢þ
>WENV170573460
FLYL01000025
[FLYL] hot springs metagenome; Sediment
181913
181838
-
Val
CAC
[ENA]
¢þ
>SRA1013949
SRR023821.3765
Pru Toh Daeng peat swamp (SRP001114)
201
126
-
Val
CAC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK