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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Pru Toh Daeng peat swamp (SRP001114)
Anticodon = CAG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.120874 (13 seq.)
>W1711081983
LSTK01000046
Acidobacteriota
Acidobacteria bacterium SCGC AG-212-P17 [LSTK]
802
716
-
Leu
CAG
[ENA]
¡û
>W131179132
ARMD01000014
Acidobacteriota
Acidobacteriaceae bacterium KBS 83 [ARMD]
114283
114197
-
Leu
CAG
[ENA]
¡û
>WENV180025058
FTIL01054243
[FTIL] metagenome; soil
181
95
-
Leu
CAG
[ENA]
¢þ
>WENV180027361
FTIX01247463
[FTIX] metagenome; soil
201
287
+
Leu
CAG
[ENA]
¢þ
>WENV181190847
OEPS010005030
[OEPS] soil metagenome; soil
223
137
-
Leu
CAG
[ENA]
¢þ
>W141564305
JIAQ01000029
Acidobacteriota
Acidobacteriaceae bacterium URHE0068 [JIAQ]
20270
20184
-
Leu
CAG
[ENA]
¡û
>W1810046934
OKRB01000068
Acidobacteriota
Candidatus Sulfotelmatomonas gaucii SbA5 Peat soil MAG SbA5 [OKRB]
22498
22412
-
Leu
CAG
[ENA]
¡û
>W1810915048
QVQT01000005
Acidobacteriota
Paracidobacterium acidisoli 4G-K13 [QVQT]
163777
163863
+
Leu
CAG
[ENA]
¡û
>SRA1014012
SRR023821.39974
Pru Toh Daeng peat swamp (SRP001114)
245
159
-
Leu
CAG
[SRA]
>SRA1014016
SRR023821.40667
Pru Toh Daeng peat swamp (SRP001114)
245
159
-
Leu
CAG
[SRA]
>SRA1014061
SRR023821.68958
Pru Toh Daeng peat swamp (SRP001114)
245
159
-
Leu
CAG
[SRA]
>W1511591137
LBHJ01000014
Acidobacteriota
Silvibacterium bohemicum S15 [LBHJ]
72283
72197
-
Leu
CAG
[ENA]
¡û
>W1610920818
LSTK01000046
Acidobacteriota
Acidobacteria bacterium SCGC AG-212-P17 [LSTK]
802
716
-
Leu
CAG
[ENA]
¡û
Identical group No.161600 (3 seq.)
>WENV181292139
OFHD01044301
[OFHD] soil metagenome; Clay
420
335
-
Leu
CAG
[ENA]
¢þ
>WENV181293991
OFHG01054123
[OFHG] soil metagenome; Clay
513
428
-
Leu
CAG
[ENA]
¢þ
>SRA1013909
SRR023820.10743
Pru Toh Daeng peat swamp (SRP001114)
181
96
-
Leu
CAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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