tRNA genes clustered and arranged according to each identical group

Pru Toh Daeng peat swamp (SRP001114)

Anticodon = CAT

HIT: 9 Group(s).
Download Sequence Representative sequence of each cluster
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Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.271220 (3 seq.)
>C08011132 AP009510 Elusimicrobiota Candidatus Endomicrobium trichonymphae Rs-D17 genomovar Ri2008 [AP009510] 863279 863206 - Met CAT - ¡û
>SRA1013915 SRR023820.19181 Pru Toh Daeng peat swamp (SRP001114) 214 138 - Met CAT [SRA]
>ENV000878 AP009510 Environmental sample from ENV division of INSDC 863279 863203 - Met CAT [ENA]
Identical group No.329726 (4 seq.)
>WENV180584927 OCOJ01705777 [OCOJ] soil metagenome; soil 376 300 - fMet CAT [ENA] ¢þ
>WENV181292081 OFHD01030341 [OFHD] soil metagenome; Clay 138 214 + fMet CAT [ENA] ¢þ
>WENV170573673 FLYL01015684 [FLYL] hot springs metagenome; Sediment 137 213 + Met CAT [ENA] ¢þ
>SRA1014024 SRR023821.43170 Pru Toh Daeng peat swamp (SRP001114) 21 97 + Met CAT [SRA]
Identical group No.391573 (1 seq.)
>SRA1014035 SRR023821.45960 Pru Toh Daeng peat swamp (SRP001114) 124 48 - Met CAT [SRA]
Identical group No.391574 (1 seq.)
>SRA1014036 SRR023821.46283 Pru Toh Daeng peat swamp (SRP001114) 120 196 + Met CAT [SRA]
Identical group No.391575 (8 seq.)
>SRA1014037 SRR023821.46615 Pru Toh Daeng peat swamp (SRP001114) 141 217 + Met CAT [SRA]
>SRA1014039 SRR023821.48930 Pru Toh Daeng peat swamp (SRP001114) 143 219 + Met CAT [SRA]
>SRA1014045 SRR023821.54396 Pru Toh Daeng peat swamp (SRP001114) 143 219 + Met CAT [SRA]
>SRA1014050 SRR023821.59764 Pru Toh Daeng peat swamp (SRP001114) 141 217 + Met CAT [SRA]
>SRA1014054 SRR023821.64453 Pru Toh Daeng peat swamp (SRP001114) 141 217 + Met CAT [SRA]
>SRA1014060 SRR023821.68717 Pru Toh Daeng peat swamp (SRP001114) 141 217 + Met CAT [SRA]
>SRA1014067 SRR023821.76913 Pru Toh Daeng peat swamp (SRP001114) 142 218 + Met CAT [SRA]
>SRA1014069 SRR023821.79627 Pru Toh Daeng peat swamp (SRP001114) 143 219 + Met CAT [SRA]
Identical group No.463196 (42 seq.)
>W1711228865 LXWX01000111 Alphaproteobacteria Methylosinus sp. 3S-1 [LXWX] 537 462 - Met CAT [ENA] ¡û
>W131163827 ARAB01000008 Alphaproteobacteria Methylosinus sp. LW4 [ARAB] 1092003 1092078 + Met CAT [ENA] ¡û
>W131166838 ARCT01000002 Alphaproteobacteria Methylocystis rosea SV97 [ARCT] 316732 316657 - Met CAT [ENA] ¡û
>W131186339 ARWA01000001 Alphaproteobacteria Methyloferula stellata AR4 [ARWA] 145125 145050 - Met CAT [ENA] ¡û
>WENV180270855 OBEQ012209120 [OBEQ] groundwater metagenome; groundwater 708 633 - Ile2 CAT [ENA] ¢þ
>W141188917 AYNA01000128 Alphaproteobacteria Methylocystis sp. SB2 [AYNA] 20542 20467 - Met CAT [ENA] ¡û
>W08008843 ABLP01000003 Alphaproteobacteria Methylocella silvestris BL2 [ABLP] 346531 346606 + Met CAT [ENA] ¡û
>C08001594 CP001016 Alphaproteobacteria Beijerinckia indica subsp. indica ATCC 9039 [CP001016] 3968812 3968740 - Met CAT [Ensembl] ¡û
>WENV183669967 ORJL010893897 [ORJL] groundwater metagenome; groundwater 660 735 + Ile2 CAT [ENA] ¢þ
>WENV183671319 ORJL011046479 [ORJL] groundwater metagenome; groundwater 4309 4234 - Ile2 CAT [ENA] ¢þ
>WENV170011132 APMI01045315 [APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater 259 334 + Met CAT [ENA] ¢þ
>WENV170012383 APMI01166221 [APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater 697 622 - Met CAT [ENA] ¢þ
>WENV170552943 CXWK01004355 [CXWK] wastewater metagenome; activated sludge 12768 12693 - Met CAT [ENA] ¢þ
>WENV170714659 LNFM01092097 [LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant 1491 1416 - Met CAT [ENA] ¢þ
>WENV170975077 MTKY01090362 [MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant 3583 3508 - Met CAT [ENA] ¢þ
>C181089655 CP023737 Alphaproteobacteria Methylosinus trichosporium OB3b [CP023737] 1236913 1236838 - Met CAT - ¡û
>C191028856 CP024846 Alphaproteobacteria Beijerinckiaceae bacterium MG08 [CP024846] 1169451 1169526 + Met CAT - ¡û
>C191029908 CP025086 Alphaproteobacteria Methylovirgula ligni BW863 [CP025086] 822967 823042 + Met CAT - ¡û
>C191118918 CP034086 Alphaproteobacteria Methylocystis rosea GW6 [CP034086] 1152924 1152849 - Met CAT - ¡û
>C191220363 LR536450 Alphaproteobacteria Methylocella tundrae [LR536450] 395952 395877 - Met CAT - ¡û
>C191221067 LR590083 Alphaproteobacteria Beijerinckiaceae bacterium RH AL1 [LR590083] 2826156 2826231 + Met CAT - ¡û
>W141817260 JQKO01000001 Alphaproteobacteria Methylocapsa aurea [JQKO] 140858 140933 + Met CAT [ENA] ¡û
>W141821209 JQNK01000008 Alphaproteobacteria Methylosinus sp. PW1 [JQNK] 509947 509872 - Met CAT [ENA] ¡û
>W1910914017 NHSJ01000118 Alphaproteobacteria Rhodoblastus sphagnicola DSM 16996 [NHSJ] 25420 25495 + Met CAT [ENA] ¡û
>W1911148304 NPET01000003 Alphaproteobacteria Rhodoblastus acidophilus DSM 137 [NPET] 94199 94274 + Met CAT [ENA] ¡û
>C09107930 CP001280 Alphaproteobacteria Methylocella silvestris BL2 [CP001280] 358737 358662 - Met CAT [Ensembl] ¡û
>W1911219107 NRRJ01000012 Alphaproteobacteria Rhodoblastus acidophilus DSM 137 [NRRJ] 87696 87771 + Met CAT [ENA] ¡û
>W1911747233 QWDD01000001 Alphaproteobacteria Methylocystis hirsuta CSC1 [QWDD] 2674136 2674211 + Met CAT [ENA] ¡û
>W1810068784 PDZR01000004 Alphaproteobacteria Methylocella silvestris TVC [PDZR] 125813 125888 + Met CAT [ENA] ¡û
>W1810330569 PUIV01000018 Alphaproteobacteria Methylosinus sporium DSM 17706 [PUIV] 51547 51472 - Met CAT [ENA] ¡û
>W1810397217 PYDU01000020 Alphaproteobacteria Methylocystis sp. MitZ-2018 [PYDU] 37835 37760 - Met CAT [ENA] ¡û
>W1810720678 QNRK01000028 Alphaproteobacteria Roseiarcus fermentans DSM 24875 [QNRK] 91029 90954 - Met CAT [ENA] ¡û
>W1810884377 QUMO01000004 Alphaproteobacteria Methylovirgula ligni BW863 [QUMO] 61907 61832 - Met CAT [ENA] ¡û
>SRA1013914 SRR023820.17181 Pru Toh Daeng peat swamp (SRP001114) 77 152 + Met CAT [SRA]
>SRA1013937 SRR023820.62040 Pru Toh Daeng peat swamp (SRP001114) 80 155 + Met CAT [SRA]
>W10118845 ADVE01000069 Alphaproteobacteria Methylosinus trichosporium OB3b [ADVE] 22106 22181 + Met CAT [ENA] ¡û
>W11125017 ADVE01000069 Alphaproteobacteria Methylosinus trichosporium OB3b [ADVE] 22106 22181 + Met CAT [ENA] ¡û
>W11150233 AEVM01000007 Alphaproteobacteria Methylocystis sp. ATCC 49242 [AEVM] 140585 140660 + Met CAT [ENA] ¡û
>C131019926 HE956757 Alphaproteobacteria Methylocystis sp. SC2 [HE956757] 3725302 3725227 - Met CAT [Ensembl] ¡û
>W1611012782 LXWX01000111 Alphaproteobacteria Methylosinus sp. 3S-1 [LXWX] 537 462 - Met CAT [ENA] ¡û
>W1710567153 FOSN01000001 Alphaproteobacteria Methylocapsa palsarum [FOSN] 306184 306259 + Met CAT [ENA] ¡û
>W1710609856 FYDG01000003 Alphaproteobacteria Rhodoblastus acidophilus [FYDG] 17033 16958 - Met CAT [ENA] ¡û
Identical group No.585335 (1 seq.)
>SRA1013988 SRR023821.25056 Pru Toh Daeng peat swamp (SRP001114) 72 147 + Met CAT [SRA]
Identical group No.585338 (1 seq.)
>SRA1014000 SRR023821.33774 Pru Toh Daeng peat swamp (SRP001114) 145 217 + Met CAT [SRA]
Identical group No.816041 (1 seq.)
>SRA1014002 SRR023821.34220 Pru Toh Daeng peat swamp (SRP001114) 98 25 - Met CAT [SRA]
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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