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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Pru Toh Daeng peat swamp (SRP001114)
Anticodon = CCG
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.391563 (1 seq.)
>SRA1013959
SRR023821.9257
Pru Toh Daeng peat swamp (SRP001114)
13
89
+
Arg
CCG
[SRA]
Identical group No.391564 (1 seq.)
>SRA1013962
SRR023821.10830
Pru Toh Daeng peat swamp (SRP001114)
85
9
-
Arg
CCG
[SRA]
Identical group No.391568 (2 seq.)
>WENV183692319
ORMF011901332
[ORMF] groundwater metagenome; groundwater
711
787
+
Arg
CCG
[ENA]
¢þ
>SRA1013997
SRR023821.32029
Pru Toh Daeng peat swamp (SRP001114)
31
107
+
Arg
CCG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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