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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Pru Toh Daeng peat swamp (SRP001114)
Anticodon = CCT
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.391566 (2 seq.)
>WENV180584243
OCOJ01033048
[OCOJ] soil metagenome; soil
38163
38087
-
Arg
CCT
[ENA]
¢þ
>SRA1013982
SRR023821.20094
Pru Toh Daeng peat swamp (SRP001114)
81
157
+
Arg
CCT
[SRA]
Identical group No.398832 (2 seq.)
>WENV180584767
OCOJ01366297
[OCOJ] soil metagenome; soil
294
218
-
Arg
CCT
[ENA]
¢þ
>SRA1013935
SRR023820.56195
Pru Toh Daeng peat swamp (SRP001114)
100
176
+
Arg
CCT
[SRA]
Identical group No.492516 (18 seq.)
>WENV180021198
FTDZ01000060
[FTDZ] metagenome; soil
548
473
-
Arg
CCT
[ENA]
¢þ
>WENV180021339
FTEJ01000790
[FTEJ] metagenome; soil
680
605
-
Arg
CCT
[ENA]
¢þ
>WENV180021500
FTEM01001170
[FTEM] metagenome; soil
956
1031
+
Arg
CCT
[ENA]
¢þ
>WENV180021614
FTEV01001217
[FTEV] metagenome; soil
6402
6327
-
Arg
CCT
[ENA]
¢þ
>WENV180021901
FTFD01000225
[FTFD] metagenome; soil
1672
1597
-
Arg
CCT
[ENA]
¢þ
>WENV180029858
FTJL01009686
[FTJL] metagenome; soil
72
147
+
Arg
CCT
[ENA]
¢þ
>WENV180029877
FTJL01011354
[FTJL] metagenome; soil
1128
1053
-
Arg
CCT
[ENA]
¢þ
>WENV180031057
FTJO01002355
[FTJO] metagenome; soil
1369
1444
+
Arg
CCT
[ENA]
¢þ
>WENV180031311
FTJO01015706
[FTJO] metagenome; soil
968
893
-
Arg
CCT
[ENA]
¢þ
>WENV180031509
FTJO01231538
[FTJO] metagenome; soil
107
32
-
Arg
CCT
[ENA]
¢þ
>WENV180357689
OBNN01067092
[OBNN] marine metagenome; Coastal water
164
239
+
Arg
CCT
[ENA]
¢þ
>WENV180691790
OCZS010217323
[OCZS] soil metagenome; soil
332
257
-
Arg
CCT
[ENA]
¢þ
>WENV181170460
OEIV010048854
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
527
452
-
Arg
CCT
[ENA]
¢þ
>WENV181192709
OEPS010951548
[OEPS] soil metagenome; soil
42
117
+
Arg
CCT
[ENA]
¢þ
>WENV170564431
CZKO01000100
[CZKO] soil metagenome genome assembly CiPEHR-AK-2010-FBin.10, contig:; soil
268
193
-
Arg
CCT
[ENA]
¢þ
>WENV170650207
JRYD01023755
[JRYD] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 2 ppm DO
1568
1643
+
Arg
CCT
[ENA]
¢þ
>WENV170651006
JRYE01133385
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
364
439
+
Arg
CCT
[ENA]
¢þ
>SRA1013951
SRR023821.5561
Pru Toh Daeng peat swamp (SRP001114)
200
125
-
Arg
CCT
[SRA]
Identical group No.593606 (1 seq.)
>SRA1013906
SRR023820.3848
Pru Toh Daeng peat swamp (SRP001114)
54
129
+
Arg
CCT
[SRA]
Identical group No.739319 (1 seq.)
>SRA1013926
SRR023820.41880
Pru Toh Daeng peat swamp (SRP001114)
69
142
+
Arg
CCT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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