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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Pru Toh Daeng peat swamp (SRP001114)
Anticodon = CGG
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.243519 (20 seq.)
>WENV180260535
OBEQ011208785
[OBEQ] groundwater metagenome; groundwater
80
3
-
Pro
CGG
[ENA]
¢þ
>WENV180263821
OBEQ011509541
[OBEQ] groundwater metagenome; groundwater
326
403
+
Pro
CGG
[ENA]
¢þ
>WENV180295761
OBIZ01300812
[OBIZ] soil metagenome; soil
157
80
-
Pro
CGG
[ENA]
¢þ
>WENV180320770
OBKQ01018447
[OBKQ] soil metagenome; Clay
360
437
+
Pro
CGG
[ENA]
¢þ
>WENV180342398
OBLJ01015162
[OBLJ] soil metagenome; Clay
584
507
-
Pro
CGG
[ENA]
¢þ
>WENV180350320
OBLQ010000259
[OBLQ] soil metagenome; soil
142
65
-
Pro
CGG
[ENA]
¢þ
>WENV181286006
OFGU01018750
[OFGU] soil metagenome; Clay
211
288
+
Pro
CGG
[ENA]
¢þ
>WENV181292734
OFHF01010580
[OFHF] soil metagenome; Clay
1053
1130
+
Pro
CGG
[ENA]
¢þ
>WENV181293346
OFHG01001729
[OFHG] soil metagenome; Clay
3815
3738
-
Pro
CGG
[ENA]
¢þ
>WENV181293824
OFHG01027960
[OFHG] soil metagenome; Clay
992
1069
+
Pro
CGG
[ENA]
¢þ
>WENV181294843
OFHH01053369
[OFHH] soil metagenome; Clay
379
456
+
Pro
CGG
[ENA]
¢þ
>WENV181296984
OFHK01003655
[OFHK] soil metagenome; Clay
268
191
-
Pro
CGG
[ENA]
¢þ
>WENV183670930
ORJL011003849
[ORJL] groundwater metagenome; groundwater
211
134
-
Pro
CGG
[ENA]
¢þ
>WENV183676280
ORJL011606399
[ORJL] groundwater metagenome; groundwater
357
434
+
Pro
CGG
[ENA]
¢þ
>WENV183724378
PJQE01010857
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
316
393
+
Pro
CGG
[ENA]
¢þ
>WENV183725828
PJQF01021716
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
129
52
-
Pro
CGG
[ENA]
¢þ
>WENV170573502
FLYL01000772
[FLYL] hot springs metagenome; Sediment
33204
33127
-
Pro
CGG
[ENA]
¢þ
>WENV170574996
FLYN01022564
[FLYN] hot springs metagenome; Sediment
599
522
-
Pro
CGG
[ENA]
¢þ
>W1910760536
MNKG01000097
Unclassified
archaeon 13_1_20CM_2_54_9 [MNKG]
10683
10606
-
Pro
CGG
[ENA]
¡û
>SRA1014070
SRR023821.79826
Pru Toh Daeng peat swamp (SRP001114)
9
86
+
Pro
CGG
[SRA]
Identical group No.518394 (4 seq.)
>WENV180352974
OBLQ010469736
[OBLQ] soil metagenome; soil
323
248
-
Pro
CGG
[ENA]
¢þ
>WENV183093101
OLLS01000173
[OLLS] soil metagenome; soil
84646
84571
-
Pro
CGG
[ENA]
¢þ
>SRA1013954
SRR023821.7474
Pru Toh Daeng peat swamp (SRP001114)
137
62
-
Pro
CGG
[SRA]
>SRA1013972
SRR023821.15221
Pru Toh Daeng peat swamp (SRP001114)
137
62
-
Pro
CGG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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