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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Pru Toh Daeng peat swamp (SRP001114)
Anticodon = CGT
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.483014 (7 seq.)
>WENV181145642
OEHO01371166
[OEHO] metagenome; unknown
76
151
+
Thr
CGT
[ENA]
¢þ
>WENV181190762
OEPS010002323
[OEPS] soil metagenome; soil
748
823
+
Thr
CGT
[ENA]
¢þ
>W141564306
JIAQ01000032
Acidobacteriota
Acidobacteriaceae bacterium URHE0068 [JIAQ]
35734
35809
+
Thr
CGT
[ENA]
¡û
>W141817049
JQKI01000040
Acidobacteriota
Edaphobacter aggregans DSM 19364 [JQKI]
42651
42726
+
Thr
CGT
[ENA]
¡û
>W1810587144
QFFY01000002
Acidobacteriota
Occallatibacter savannae AB23 [QFFY]
478202
478127
-
Thr
CGT
[ENA]
¡û
>W1810915046
QVQT01000004
Acidobacteriota
Paracidobacterium acidisoli 4G-K13 [QVQT]
455252
455177
-
Thr
CGT
[ENA]
¡û
>SRA1013922
SRR023820.38316
Pru Toh Daeng peat swamp (SRP001114)
156
81
-
Thr
CGT
[SRA]
Identical group No.529328 (5 seq.)
>C017501
CP000482
Thermodesulfobacteriota
Pelobacter propionicus DSM 2379 [CP000482]
1409606
1409531
-
Thr
CGT
[Ensembl]
¡û
>C017502
CP000482
Thermodesulfobacteriota
Pelobacter propionicus DSM 2379 [CP000482]
1399164
1399089
-
Thr
CGT
[Ensembl]
¡û
>W09103511
AAJH01000002
Thermodesulfobacteriota
Pelobacter propionicus DSM 2379 [AAJH]
330820
330895
+
Thr
CGT
[ENA]
¡û
>W09103554
AAJH01000026
Thermodesulfobacteriota
Pelobacter propionicus DSM 2379 [AAJH]
46540
46615
+
Thr
CGT
[ENA]
¡û
>SRA1014075
SRR023821.85958
Pru Toh Daeng peat swamp (SRP001114)
184
109
-
Thr
CGT
[SRA]
Identical group No.573352 (1 seq.)
>SRA1013902
SRR023819.1727
Pru Toh Daeng peat swamp (SRP001114)
44
119
+
Thr
CGT
[SRA]
Identical group No.585328 (1 seq.)
>SRA1013950
SRR023821.4122
Pru Toh Daeng peat swamp (SRP001114)
150
75
-
Thr
CGT
[SRA]
Identical group No.593607 (3 seq.)
>SRA1013916
SRR023820.27149
Pru Toh Daeng peat swamp (SRP001114)
131
56
-
Thr
CGT
[SRA]
>SRA1013921
SRR023820.37820
Pru Toh Daeng peat swamp (SRP001114)
131
56
-
Thr
CGT
[SRA]
>SRA1013924
SRR023820.39635
Pru Toh Daeng peat swamp (SRP001114)
131
56
-
Thr
CGT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK