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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Pru Toh Daeng peat swamp (SRP001114)
Anticodon = CTT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.483019 (8 seq.)
>WENV180019209
FTBL01000069
[FTBL] metagenome; soil
2699
2774
+
Lys
CTT
[ENA]
¢þ
>WENV181191241
OEPS010045646
[OEPS] soil metagenome; soil
321
396
+
Lys
CTT
[ENA]
¢þ
>WENV170564208
CZKF01000169
[CZKF] soil metagenome genome assembly CiPEHR-AK-2010-FBin.20, contig:; soil
235
310
+
Lys
CTT
[ENA]
¢þ
>W141564308
JIAQ01000041
Acidobacteriota
Acidobacteriaceae bacterium URHE0068 [JIAQ]
14618
14543
-
Lys
CTT
[ENA]
¡û
>W1810587168
QFFY01000007
Acidobacteriota
Occallatibacter savannae AB23 [QFFY]
111170
111245
+
Lys
CTT
[ENA]
¡û
>SRA1014085
SRR023821.89444
Pru Toh Daeng peat swamp (SRP001114)
220
145
-
Lys
CTT
[SRA]
>W1610576111
LAIJ01000010
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
601408
601483
+
Lys
CTT
[ENA]
¡û
>W1710694375
LAIJ01000010
Acidobacteriota
Terracidiphilus gabretensis [LAIJ]
601408
601483
+
Lys
CTT
[ENA]
¡û
Identical group No.585329 (1 seq.)
>SRA1013956
SRR023821.8728
Pru Toh Daeng peat swamp (SRP001114)
114
39
-
Lys
CTT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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