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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Pru Toh Daeng peat swamp (SRP001114)
Anticodon = GCT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.10966 (1 seq.)
>SRA1013927
SRR023820.42632
Pru Toh Daeng peat swamp (SRP001114)
64
157
+
Ser
GCT
[SRA]
Identical group No.26602 (1 seq.)
>SRA1014046
SRR023821.55106
Pru Toh Daeng peat swamp (SRP001114)
145
236
+
Ser
GCT
[SRA]
Identical group No.31806 (27 seq.)
>WENV180021281
FTEF01001290
[FTEF] metagenome; soil
2437
2527
+
Ser
GCT
[ENA]
¢þ
>WENV180023045
FTHH01000670
[FTHH] metagenome; soil
8705
8615
-
Ser
GCT
[ENA]
¢þ
>WENV180031205
FTJO01009226
[FTJO] metagenome; soil
1348
1438
+
Ser
GCT
[ENA]
¢þ
>WENV180032210
FTJX01041975
[FTJX] metagenome; soil
176
266
+
Ser
GCT
[ENA]
¢þ
>WENV180036638
FVAA010228971
[FVAA] soil metagenome; Soil
91
1
-
Ser
GCT
[ENA]
¢þ
>WENV180095836
MTBK01092603
[MTBK] anaerobic digester metagenome; biogas reactors fed with pig manure or primary and secondary sludge
162
252
+
Ser
GCT
[ENA]
¢þ
>WENV180266013
OBEQ011711293
[OBEQ] groundwater metagenome; groundwater
318
228
-
Ser
GCT
[ENA]
¢þ
>WENV180304132
OBJH01059309
[OBJH] soil metagenome; soil
21
111
+
Ser
GCT
[ENA]
¢þ
>WENV180304332
OBJI01002474
[OBJI] soil metagenome; soil
919
829
-
Ser
GCT
[ENA]
¢þ
>WENV180309149
OBJR01594967
[OBJR] soil metagenome; soil
114
204
+
Ser
GCT
[ENA]
¢þ
>WENV180315261
OBKH01051927
[OBKH] soil metagenome; rice field; elevated CO2 plus elevated temperature
195
285
+
Ser
GCT
[ENA]
¢þ
>WENV180343143
OBLK01000016
[OBLK] soil metagenome; Clay
112372
112462
+
Ser
GCT
[ENA]
¢þ
>WENV180351205
OBLQ010033092
[OBLQ] soil metagenome; soil
1138
1048
-
Ser
GCT
[ENA]
¢þ
>WENV181144806
OEHO01099233
[OEHO] metagenome; unknown
82
172
+
Ser
GCT
[ENA]
¢þ
>WENV181170242
OEIV010032957
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
65
155
+
Ser
GCT
[ENA]
¢þ
>WENV181191576
OEPS010121037
[OEPS] soil metagenome; soil
186
96
-
Ser
GCT
[ENA]
¢þ
>WENV181295214
OFHI01004811
[OFHI] soil metagenome; Clay
396
306
-
Ser
GCT
[ENA]
¢þ
>WENV181295643
OFHJ01000052
[OFHJ] soil metagenome; Clay
9142
9232
+
Ser
GCT
[ENA]
¢þ
>WENV181295821
OFHJ01000868
[OFHJ] soil metagenome; Clay
9059
9149
+
Ser
GCT
[ENA]
¢þ
>WENV181378232
OFRA01104136
[OFRA] wastewater metagenome; Lake Maggiore Verbania
220
310
+
Ser
GCT
[ENA]
¢þ
>WENV170013397
AUZX01002186
[AUZX] mine drainage metagenome; uppermost (B1A) sediment-attached strata from acid streamer/mats thriving at Los Rueldos
471
381
-
Ser
GCT
[ENA]
¢þ
>WENV170013828
AUZZ01010465
[AUZZ] mine drainage metagenome; submerged non-stratified mat biofilm (B2A) from acid streamer/mats thriving at Los Rueldos
275
365
+
Ser
GCT
[ENA]
¢þ
>WENV170564429
CZKO01000098
[CZKO] soil metagenome genome assembly CiPEHR-AK-2010-FBin.10, contig:; soil
554
464
-
Ser
GCT
[ENA]
¢þ
>WENV170646207
JQGG01030182
[JQGG] wastewater metagenome; domestic wastewater sediment treated with nitrate and nitrite at 100mg /litre each
133
223
+
Ser
GCT
[ENA]
¢þ
>SRA1013999
SRR023821.33477
Pru Toh Daeng peat swamp (SRP001114)
145
235
+
Ser
GCT
[SRA]
>SRA1014015
SRR023821.40527
Pru Toh Daeng peat swamp (SRP001114)
145
235
+
Ser
GCT
[SRA]
>SRA1014072
SRR023821.82182
Pru Toh Daeng peat swamp (SRP001114)
145
235
+
Ser
GCT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK