This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Pru Toh Daeng peat swamp (SRP001114)
Anticodon = GGA
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.40634 (1 seq.)
>SRA1014071
SRR023821.80932
Pru Toh Daeng peat swamp (SRP001114)
174
84
-
Ser
GGA
[SRA]
Identical group No.51533 (14 seq.)
>WENV180025065
FTIL01059549
[FTIL] metagenome; soil
168
257
+
Ser
GGA
[ENA]
¢þ
>WENV180295140
OBIZ01028894
[OBIZ] soil metagenome; soil
804
893
+
Ser
GGA
[ENA]
¢þ
>WENV180351161
OBLQ010029785
[OBLQ] soil metagenome; soil
1606
1695
+
Ser
GGA
[ENA]
¢þ
>WENV181144598
OEHO01045236
[OEHO] metagenome; unknown
159
248
+
Ser
GGA
[ENA]
¢þ
>WENV181192073
OEPS010395254
[OEPS] soil metagenome; soil
176
87
-
Ser
GGA
[ENA]
¢þ
>WENV181291997
OFHD01016375
[OFHD] soil metagenome; Clay
419
330
-
Ser
GGA
[ENA]
¢þ
>WENV170370840
CETR01162449
[CETR] marine metagenome genome assembly TARA_112_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
417
328
-
Ser
GGA
[ENA]
¢þ
>WENV170564196
CZKF01000052
[CZKF] soil metagenome genome assembly CiPEHR-AK-2010-FBin.20, contig:; soil
23120
23209
+
Ser
GGA
[ENA]
¢þ
>WENV170564806
CZLA01000089
[CZLA] soil metagenome genome assembly CiPEHR-AK-2010-FBin.22, contig:; soil
12716
12805
+
Ser
GGA
[ENA]
¢þ
>WENV170648677
JRHI01001358
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
7172
7083
-
Ser
GGA
[ENA]
¢þ
>WENV170662264
JXWW01024333
[JXWW] soil metagenome; rice field; organic GM Plot
365
276
-
Ser
GGA
[ENA]
¢þ
>C09100246
CP001472
Acidobacteriota
Acidobacterium capsulatum ATCC 51196 [CP001472]
326603
326514
-
Ser
GGA
[Ensembl]
¡û
>SRA1013961
SRR023821.10774
Pru Toh Daeng peat swamp (SRP001114)
115
204
+
Ser
GGA
[SRA]
>SRA1013966
SRR023821.12417
Pru Toh Daeng peat swamp (SRP001114)
115
204
+
Ser
GGA
[SRA]
Identical group No.63126 (1 seq.)
>SRA1014076
SRR023821.85996
Pru Toh Daeng peat swamp (SRP001114)
245
157
-
Ser
GGA
[SRA]
Identical group No.104483 (1 seq.)
>SRA1013904
SRR023820.731
Pru Toh Daeng peat swamp (SRP001114)
153
66
-
Ser
GGA
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK