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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Pru Toh Daeng peat swamp (SRP001114)
Anticodon = GGC
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.458228 (8 seq.)
>W1711416626
MHDU01000033
Nitrospirota
Nitrospirae bacterium GWB2_47_37 [MHDU]
11845
11772
-
Ala
GGC
[ENA]
¡û
>WENV180262068
OBEQ011353819
[OBEQ] groundwater metagenome; groundwater
422
347
-
Ala
GGC
[ENA]
¢þ
>WENV180286014
OBID01924937
[OBID] metagenome; sludge
27
102
+
Ala
GGC
[ENA]
¢þ
>WENV180584589
OCOJ01061976
[OCOJ] soil metagenome; soil
3900
3827
-
Ala
GGC
[ENA]
¢þ
>WENV183092482
OLLE01000264
[OLLE] soil metagenome; soil
30227
30302
+
Ala
GGC
[ENA]
¢þ
>SRA1014019
SRR023821.42535
Pru Toh Daeng peat swamp (SRP001114)
152
79
-
Ala
GGC
[SRA]
>SRA1014023
SRR023821.43057
Pru Toh Daeng peat swamp (SRP001114)
152
79
-
Ala
GGC
[SRA]
>SRA1014029
SRR023821.44094
Pru Toh Daeng peat swamp (SRP001114)
152
79
-
Ala
GGC
[SRA]
Identical group No.470169 (7 seq.)
>W1710893864
LNFE01000149
Acidobacteriota
Acidobacteria bacterium Ga0077553 [LNFE]
5378
5453
+
Ala
GGC
[ENA]
¡û
>WENV181168385
OEIU01323008
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
206
131
-
Ala
GGC
[ENA]
¢þ
>WENV170712123
LNFM01009911
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
4837
4912
+
Ala
GGC
[ENA]
¢þ
>W141730249
JNIF01000003
Acidobacteriota
Bryobacter aggregatus MPL3 [JNIF]
2092758
2092833
+
Ala
GGC
[ENA]
¡û
>SRA1014063
SRR023821.71639
Pru Toh Daeng peat swamp (SRP001114)
51
126
+
Ala
GGC
[SRA]
>SRA1014068
SRR023821.78320
Pru Toh Daeng peat swamp (SRP001114)
51
126
+
Ala
GGC
[SRA]
>W1610754130
LNFE01000149
Acidobacteriota
Acidobacteria bacterium Ga0077553 [LNFE]
5378
5453
+
Ala
GGC
[ENA]
¡û
Identical group No.486491 (2 seq.)
>W1711391907
MEMX01000045
Myxococcota
Anaeromyxobacter sp. RBG_16_69_14 [MEMX]
84331
84256
-
Ala
GGC
[ENA]
¡û
>SRA1014055
SRR023821.65813
Pru Toh Daeng peat swamp (SRP001114)
221
146
-
Ala
GGC
[SRA]
Identical group No.493282 (15 seq.)
>WENV180249758
OBEQ010228329
[OBEQ] groundwater metagenome; groundwater
310
235
-
Ala
GGC
[ENA]
¢þ
>WENV180291644
OBIV01115559
[OBIV] soil metagenome; Clay
382
307
-
Ala
GGC
[ENA]
¢þ
>WENV180695355
OCZS013376784
[OCZS] soil metagenome; soil
137
62
-
Ala
GGC
[ENA]
¢þ
>WENV181173362
OEIV011419446
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
115
40
-
Ala
GGC
[ENA]
¢þ
>WENV181185741
OELY01000125
[OELY] metagenome; 1998
1502
1577
+
Ala
GGC
[ENA]
¢þ
>WENV181193258
OEPS011681701
[OEPS] soil metagenome; soil
98
23
-
Ala
GGC
[ENA]
¢þ
>WENV183666881
ORJL010593288
[ORJL] groundwater metagenome; groundwater
828
753
-
Ala
GGC
[ENA]
¢þ
>WENV183675273
ORJL011489645
[ORJL] groundwater metagenome; groundwater
1
76
+
Ala
GGC
[ENA]
¢þ
>WENV183693087
ORMF012022175
[ORMF] groundwater metagenome; groundwater
336
411
+
Ala
GGC
[ENA]
¢þ
>WENV170003377
AGTN01317672
[AGTN] bioreactor metagenome; poplar biomass
116
41
-
Ala
GGC
[ENA]
¢þ
>WENV170003511
AGTN01364131
[AGTN] bioreactor metagenome; poplar biomass
220
145
-
Ala
GGC
[ENA]
¢þ
>WENV170564414
CZKN01000192
[CZKN] soil metagenome genome assembly CiPEHR-AK-2010-FBin.21, contig:; soil
1004
929
-
Ala
GGC
[ENA]
¢þ
>W1810047015
OKRF01000405
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA3 SbA3 Peat soil MAG SbA3 [OKRF]
185
110
-
Ala
GGC
[ENA]
¡û
>W1810047225
OMOG01000148
Acidobacteriota
Candidatus Sulfopaludibacter sp. SbA4 SbA4 Peat soil MAG SbA4 [OMOG]
42980
42905
-
Ala
GGC
[ENA]
¡û
>SRA1014080
SRR023821.87257
Pru Toh Daeng peat swamp (SRP001114)
34
109
+
Ala
GGC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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