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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Pru Toh Daeng peat swamp (SRP001114)
Anticodon = GGG
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.288548 (37 seq.)
>W1711573909
MNEC01000087
Acidobacteriota
Acidobacteriales bacterium 13_2_20CM_2_55_5 [MNEC]
575
499
-
Pro
GGG
[ENA]
¡û
>W1711574664
MNFW01000077
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_4_58_4 [MNFW]
5160
5236
+
Pro
GGG
[ENA]
¡û
>W1711575017
MNGW01000167
Acidobacteriota
Acidobacteriales bacterium 13_1_40CM_3_55_5 [MNGW]
1256
1180
-
Pro
GGG
[ENA]
¡û
>W1711575707
MNJG01000234
Acidobacteriota
Acidobacteria bacterium 13_1_20CM_4_56_7 [MNJG]
10950
10874
-
Pro
GGG
[ENA]
¡û
>C000178
CP000360
Acidobacteriota
Candidatus Koribacter versatilis Ellin345 [CP000360]
4689914
4689838
-
Pro
GGG
[Ensembl]
¡û
>WENV180295675
OBIZ01224094
[OBIZ] soil metagenome; soil
163
87
-
Pro
GGG
[ENA]
¢þ
>WENV180308448
OBJR01008999
[OBJR] soil metagenome; soil
920
844
-
Pro
GGG
[ENA]
¢þ
>WENV180321001
OBKQ01081490
[OBKQ] soil metagenome; Clay
156
232
+
Pro
GGG
[ENA]
¢þ
>WENV180343265
OBLK01000934
[OBLK] soil metagenome; Clay
493
417
-
Pro
GGG
[ENA]
¢þ
>WENV180350527
OBLQ010002209
[OBLQ] soil metagenome; soil
6840
6916
+
Pro
GGG
[ENA]
¢þ
>WENV180584048
OCNO01006753
[OCNO] soil metagenome; Clay
154
78
-
Pro
GGG
[ENA]
¢þ
>WENV180584376
OCOJ01037579
[OCOJ] soil metagenome; soil
26790
26866
+
Pro
GGG
[ENA]
¢þ
>WENV181144881
OEHO01123840
[OEHO] metagenome; unknown
171
95
-
Pro
GGG
[ENA]
¢þ
>WENV181165351
OEIR01764778
[OEIR] soil metagenome; soil
155
79
-
Pro
GGG
[ENA]
¢þ
>WENV181184638
OEKN01000134
[OEKN] metagenome; 1998
7416
7340
-
Pro
GGG
[ENA]
¢þ
>WENV181191619
OEPS010140982
[OEPS] soil metagenome; soil
216
292
+
Pro
GGG
[ENA]
¢þ
>WENV181292456
OFHE01018502
[OFHE] soil metagenome; Clay
478
402
-
Pro
GGG
[ENA]
¢þ
>WENV181294823
OFHH01049452
[OFHH] soil metagenome; Clay
525
449
-
Pro
GGG
[ENA]
¢þ
>WENV181295375
OFHI01030123
[OFHI] soil metagenome; Clay
639
563
-
Pro
GGG
[ENA]
¢þ
>WENV181295908
OFHJ01001882
[OFHJ] soil metagenome; Clay
1225
1149
-
Pro
GGG
[ENA]
¢þ
>WENV181296584
OFHJ01065160
[OFHJ] soil metagenome; Clay
239
163
-
Pro
GGG
[ENA]
¢þ
>WENV183093060
OLLR01000104
[OLLR] soil metagenome; soil
8940
9016
+
Pro
GGG
[ENA]
¢þ
>WENV170564179
CZKD01000110
[CZKD] soil metagenome genome assembly CiPEHR-AK-2010-FBin.3, contig:; soil
21544
21620
+
Pro
GGG
[ENA]
¢þ
>WENV170564213
CZKF01000197
[CZKF] soil metagenome genome assembly CiPEHR-AK-2010-FBin.20, contig:; soil
6402
6326
-
Pro
GGG
[ENA]
¢þ
>WENV170564327
CZKJ01000037
[CZKJ] soil metagenome genome assembly CiPEHR-AK-2010-FBin.11, contig:; soil
32562
32638
+
Pro
GGG
[ENA]
¢þ
>WENV170564551
CZKR01000143
[CZKR] soil metagenome genome assembly CiPEHR-AK-2010-FBin.7, contig:; soil
25347
25271
-
Pro
GGG
[ENA]
¢þ
>WENV170564773
CZKZ01000009
[CZKZ] soil metagenome genome assembly CiPEHR-AK-2010-FBin.19, contig:; soil
416
340
-
Pro
GGG
[ENA]
¢þ
>W141564060
JIAL01000001
Acidobacteriota
Pseudacidobacterium ailaaui PMMR2 [JIAL]
2453143
2453067
-
Pro
GGG
[ENA]
¡û
>W141564287
JIAQ01000012
Acidobacteriota
Acidobacteriaceae bacterium URHE0068 [JIAQ]
131274
131350
+
Pro
GGG
[ENA]
¡û
>W1910760534
MNKG01000024
Unclassified
archaeon 13_1_20CM_2_54_9 [MNKG]
2482
2558
+
Pro
GGG
[ENA]
¡û
>C09100213
CP001472
Acidobacteriota
Acidobacterium capsulatum ATCC 51196 [CP001472]
2655210
2655286
+
Pro
GGG
[Ensembl]
¡û
>W1810046933
OKRB01000068
Acidobacteriota
Candidatus Sulfotelmatomonas gaucii SbA5 Peat soil MAG SbA5 [OKRB]
93846
93922
+
Pro
GGG
[ENA]
¡û
>W1810587145
QFFY01000002
Acidobacteriota
Occallatibacter savannae AB23 [QFFY]
449945
449869
-
Pro
GGG
[ENA]
¡û
>W1810915056
QVQT01000005
Acidobacteriota
Paracidobacterium acidisoli 4G-K13 [QVQT]
392073
391997
-
Pro
GGG
[ENA]
¡û
>SRA1013963
SRR023821.11072
Pru Toh Daeng peat swamp (SRP001114)
31
107
+
Pro
GGG
[SRA]
>SRA1013965
SRR023821.12115
Pru Toh Daeng peat swamp (SRP001114)
31
107
+
Pro
GGG
[SRA]
>SRA1013989
SRR023821.25788
Pru Toh Daeng peat swamp (SRP001114)
31
107
+
Pro
GGG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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