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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Pru Toh Daeng peat swamp (SRP001114)
Anticodon = GGT
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.470232 (7 seq.)
>WENV180031545
FTJO01320299
[FTJO] metagenome; soil
207
132
-
Thr
GGT
[ENA]
¢þ
>WENV180584195
OCOJ01020520
[OCOJ] soil metagenome; soil
164
89
-
Thr
GGT
[ENA]
¢þ
>WENV181155301
OEID01078233
[OEID] soil metagenome; soil
143
218
+
Thr
GGT
[ENA]
¢þ
>WENV181168627
OEIU01570147
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
50
125
+
Thr
GGT
[ENA]
¢þ
>WENV181191149
OEPS010029531
[OEPS] soil metagenome; soil
507
432
-
Thr
GGT
[ENA]
¢þ
>WENV170455351
CEVA01103442
[CEVA] marine metagenome genome assembly TARA_125_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1579
1504
-
Thr
GGT
[ENA]
¢þ
>SRA1013996
SRR023821.31225
Pru Toh Daeng peat swamp (SRP001114)
4
79
+
Thr
GGT
[SRA]
Identical group No.496407 (13 seq.)
>W1711573415
MNDC01000140
Acidobacteriota
Acidobacteria bacterium 13_2_20CM_58_27 [MNDC]
15628
15703
+
Thr
GGT
[ENA]
¡û
>W1711574975
MNGU01000143
Acidobacteriota
Acidobacteria bacterium 13_1_40CM_3_56_11 [MNGU]
7906
7981
+
Thr
GGT
[ENA]
¡û
>WENV180252463
OBEQ010451748
[OBEQ] groundwater metagenome; groundwater
4
79
+
Thr
GGT
[ENA]
¢þ
>WENV180269075
OBEQ012030185
[OBEQ] groundwater metagenome; groundwater
294
219
-
Thr
GGT
[ENA]
¢þ
>WENV180308671
OBJR01109393
[OBJR] soil metagenome; soil
237
312
+
Thr
GGT
[ENA]
¢þ
>WENV180353491
OBLQ010812134
[OBLQ] soil metagenome; soil
230
305
+
Thr
GGT
[ENA]
¢þ
>WENV181144835
OEHO01106076
[OEHO] metagenome; unknown
166
91
-
Thr
GGT
[ENA]
¢þ
>WENV181191329
OEPS010059089
[OEPS] soil metagenome; soil
1
76
+
Thr
GGT
[ENA]
¢þ
>WENV181292243
OFHD01064029
[OFHD] soil metagenome; Clay
328
253
-
Thr
GGT
[ENA]
¢þ
>WENV181294216
OFHG01106688
[OFHG] soil metagenome; Clay
209
284
+
Thr
GGT
[ENA]
¢þ
>WENV183724153
PJQE01000479
[PJQE] biofilm metagenome; untreated reverse osmosis biofouled membrane
311
236
-
Thr
GGT
[ENA]
¢þ
>SRA1013952
SRR023821.5771
Pru Toh Daeng peat swamp (SRP001114)
176
251
+
Thr
GGT
[SRA]
>SRA1013984
SRR023821.22643
Pru Toh Daeng peat swamp (SRP001114)
176
251
+
Thr
GGT
[SRA]
Identical group No.556827 (2 seq.)
>WENV181407393
OGCG01023027
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
1122
1049
-
Thr
GGT
[ENA]
¢þ
>SRA1014079
SRR023821.87073
Pru Toh Daeng peat swamp (SRP001114)
123
50
-
Thr
GGT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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