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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Pru Toh Daeng peat swamp (SRP001114)
Anticodon = GTT
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.585334 (5 seq.)
>WENV180351803
OBLQ010107223
[OBLQ] soil metagenome; soil
88
13
-
Asn
GTT
[ENA]
¢þ
>WENV180584230
OCOJ01030238
[OCOJ] soil metagenome; soil
19243
19318
+
Asn
GTT
[ENA]
¢þ
>SRA1013987
SRR023821.23848
Pru Toh Daeng peat swamp (SRP001114)
166
241
+
Asn
GTT
[SRA]
>SRA1014004
SRR023821.35867
Pru Toh Daeng peat swamp (SRP001114)
166
241
+
Asn
GTT
[SRA]
>SRA1014009
SRR023821.38861
Pru Toh Daeng peat swamp (SRP001114)
166
241
+
Asn
GTT
[SRA]
Identical group No.593609 (1 seq.)
>SRA1013932
SRR023820.49363
Pru Toh Daeng peat swamp (SRP001114)
114
39
-
Asn
GTT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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