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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Pru Toh Daeng peat swamp (SRP001114)
Anticodon = TAC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.259782 (1 seq.)
>SRA1014038
SRR023821.47415
Pru Toh Daeng peat swamp (SRP001114)
179
102
-
Val
TAC
[SRA]
Identical group No.391562 (1 seq.)
>SRA1013955
SRR023821.8423
Pru Toh Daeng peat swamp (SRP001114)
18
94
+
Val
TAC
[SRA]
Identical group No.486792 (18 seq.)
>W1711411827
MGTO01000143
Thermodesulfobacteriota
Desulfuromonadales bacterium GWC2_61_20 [MGTO]
8824
8899
+
Val
TAC
[ENA]
¡û
>W1711411882
MGTQ01000073
Thermodesulfobacteriota
Desulfuromonadales bacterium GWD2_61_12 [MGTQ]
32772
32697
-
Val
TAC
[ENA]
¡û
>W1711414276
MGZH01000033
Thermodesulfobacteriota
Geobacteraceae bacterium GWB2_52_12 [MGZH]
8549
8474
-
Val
TAC
[ENA]
¡û
>W1711414383
MGZK01000097
Thermodesulfobacteriota
Geobacteraceae bacterium GWC2_55_20 [MGZK]
8113
8038
-
Val
TAC
[ENA]
¡û
>C010240
CP000698
Thermodesulfobacteriota
Geotalea uraniireducens Rf4 [CP000698]
2223142
2223217
+
Val
TAC
[Ensembl]
¡û
>C017505
CP000482
Thermodesulfobacteriota
Pelobacter propionicus DSM 2379 [CP000482]
1233328
1233253
-
Val
TAC
[Ensembl]
¡û
>w018094
AASH01000002
Thermodesulfobacteriota
Geotalea daltonii FRC-32 [AASH]
15426
15354
-
Val
TAC
[ENA]
¡û
>WENV181231236
OFEK01015275
[OFEK] activated sludge metagenome; Anaerobic digester
1363
1438
+
Val
TAC
[ENA]
¢þ
>WENV183703733
PDVJ01039371
[PDVJ] alkali sediment metagenome; glacial lake sediment
631
706
+
Val
TAC
[ENA]
¢þ
>WENV170002375
AGTN01011664
[AGTN] bioreactor metagenome; poplar biomass
21
96
+
Val
TAC
[ENA]
¢þ
>W09103517
AAJH01000003
Thermodesulfobacteriota
Pelobacter propionicus DSM 2379 [AAJH]
151922
151847
-
Val
TAC
[ENA]
¡û
>W09105086
AAON01000072
Thermodesulfobacteriota
Geotalea uraniireducens Rf4 [AAON]
14886
14811
-
Val
TAC
[ENA]
¡û
>C09106354
CP001390
Thermodesulfobacteriota
Geotalea daltonii FRC-32 [CP001390]
2902832
2902907
+
Val
TAC
[Ensembl]
¡û
>W1810486161
QAXR01000005
Thermodesulfobacteriota
Geobacter sp. DSM 2909 [QAXR]
134994
134919
-
Val
TAC
[ENA]
¡û
>SRA1013970
SRR023821.13921
Pru Toh Daeng peat swamp (SRP001114)
127
202
+
Val
TAC
[SRA]
>W1510006442
BAZF01000014
Thermodesulfobacteriota
Geobacter sp. OR-1 [BAZF]
95612
95537
-
Val
TAC
[ENA]
¡û
>W1610046420
BBCJ01000001
Thermodesulfobacteriota
Geotalea toluenoxydans JCM 15764 [BBCJ]
93501
93576
+
Val
TAC
[ENA]
¡û
>W1710043216
BBCJ01000001
Thermodesulfobacteriota
Geotalea toluenoxydans JCM 15764 [BBCJ]
93501
93576
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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