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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Pru Toh Daeng peat swamp (SRP001114)
Anticodon = TAG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.104484 (1 seq.)
>SRA1013919
SRR023820.32875
Pru Toh Daeng peat swamp (SRP001114)
56
143
+
Leu
TAG
[SRA]
Identical group No.185798 (3 seq.)
>WENV180321197
OBKQ01144598
[OBKQ] soil metagenome; Clay
159
243
+
Leu
TAG
[ENA]
¢þ
>W1810047076
OMOD01000020
Acidobacteriota
Candidatus Sulfotelmatobacter kueseliae SbA1 Peat soil MAG SbA1 [OMOD]
20250
20166
-
Leu
TAG
[ENA]
¡û
>SRA1013953
SRR023821.6324
Pru Toh Daeng peat swamp (SRP001114)
171
87
-
Leu
TAG
[SRA]
Identical group No.205154 (1 seq.)
>SRA1014026
SRR023821.43440
Pru Toh Daeng peat swamp (SRP001114)
219
138
-
Leu
TAG
[SRA]
Identical group No.206658 (4 seq.)
>SRA1013908
SRR023820.9954
Pru Toh Daeng peat swamp (SRP001114)
210
129
-
Leu
TAG
[SRA]
>SRA1013910
SRR023820.11109
Pru Toh Daeng peat swamp (SRP001114)
213
132
-
Leu
TAG
[SRA]
>SRA1013911
SRR023820.12055
Pru Toh Daeng peat swamp (SRP001114)
210
129
-
Leu
TAG
[SRA]
>SRA1013929
SRR023820.48213
Pru Toh Daeng peat swamp (SRP001114)
212
129
-
Leu
TAG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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