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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Pru Toh Daeng peat swamp (SRP001114)
Anticodon = TCC
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.734189 (1 seq.)
>SRA1013973
SRR023821.15319
Pru Toh Daeng peat swamp (SRP001114)
240
166
-
Gly
TCC
[SRA]
Identical group No.781841 (63 seq.)
>W131180127
ARMX01000020
Alphaproteobacteria
Novispirillum itersonii subsp. itersonii ATCC 12639 [ARMX]
1350
1277
-
Gly
TCC
[ENA]
¡û
>W1711352282
MDDB01000004
Bacillota
Moorella thermoacetica [MDDB]
126248
126321
+
Gly
TCC
[ENA]
¡û
>W1711352297
MDDC01000001
Bacillota
Moorella thermoacetica [MDDC]
81252
81325
+
Gly
TCC
[ENA]
¡û
>W1711352377
MDDD01000007
Bacillota
Moorella thermoacetica [MDDD]
18840
18767
-
Gly
TCC
[ENA]
¡û
>W1711352437
MDDE01000007
Bacillota
Moorella thermoacetica [MDDE]
113380
113307
-
Gly
TCC
[ENA]
¡û
>W1711428550
MIHH01000009
Bacillota
Moorella thermoacetica [MIHH]
84033
83960
-
Gly
TCC
[ENA]
¡û
>W1711428581
MIIF01000005
Bacillota
Moorella thermoacetica [MIIF]
94142
94069
-
Gly
TCC
[ENA]
¡û
>C171055175
CP017019
Bacillota
Moorella thermoacetica DSM 103132 [CP017019]
520288
520361
+
Gly
TCC
-
¡û
>C171058945
CP017237
Bacillota
Moorella thermoacetica DSM 103284 [CP017237]
441475
441548
+
Gly
TCC
-
¡û
>C014164
CP000232
Bacillota
Moorella thermoacetica [CP000232]
540866
540939
+
Gly
TCC
[Ensembl]
¡û
>WENV180091552
MPMF02202613
[MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter
151
78
-
Gly
TCC
[ENA]
¢þ
>WENV180349544
OBLO01058096
[OBLO] metagenome; feces
799
872
+
Gly
TCC
[ENA]
¢þ
>WENV180351464
OBLQ010059168
[OBLQ] soil metagenome; soil
670
597
-
Gly
TCC
[ENA]
¢þ
>WENV180539469
OCHP01028395
[OCHP] human gut metagenome; human gut
647
720
+
Gly
TCC
[ENA]
¢þ
>WENV180541273
OCHR01084624
[OCHR] human gut metagenome; human gut
172
99
-
Gly
TCC
[ENA]
¢þ
>WENV180585000
OCOJ01776881
[OCOJ] soil metagenome; soil
14
87
+
Gly
TCC
[ENA]
¢þ
>WENV180699556
ODDM01001712
[ODDM] human metagenome; G_DNA_Stool
358
431
+
Gly
TCC
[ENA]
¢þ
>WENV181072620
OEAN01009573
[OEAN] human metagenome; G_DNA_Stool
84
157
+
Gly
TCC
[ENA]
¢þ
>WENV181144783
OEHO01091608
[OEHO] metagenome; unknown
179
106
-
Gly
TCC
[ENA]
¢þ
>WENV181155433
OEID01162498
[OEID] soil metagenome; soil
107
34
-
Gly
TCC
[ENA]
¢þ
>WENV181163773
OEIQ01245302
[OEIQ] soil metagenome; soil
51
124
+
Gly
TCC
[ENA]
¢þ
>WENV181164771
OEIR01357684
[OEIR] soil metagenome; soil
49
122
+
Gly
TCC
[ENA]
¢þ
>WENV181165876
OEIS01250029
[OEIS] soil metagenome; soil
212
139
-
Gly
TCC
[ENA]
¢þ
>WENV181192381
OEPS010611529
[OEPS] soil metagenome; soil
241
168
-
Gly
TCC
[ENA]
¢þ
>WENV181295537
OFHI01063076
[OFHI] soil metagenome; Clay
473
400
-
Gly
TCC
[ENA]
¢þ
>WENV181295868
OFHJ01001438
[OFHJ] soil metagenome; Clay
290
217
-
Gly
TCC
[ENA]
¢þ
>WENV181398405
OFSD01079405
[OFSD] human gut metagenome; human gut
111
184
+
Gly
TCC
[ENA]
¢þ
>WENV181661800
OGOG01007217
[OGOG] human gut metagenome; faeces
4361
4434
+
Gly
TCC
[ENA]
¢þ
>WENV181702746
OGPJ01000698
[OGPJ] human gut metagenome; faeces
638
711
+
Gly
TCC
[ENA]
¢þ
>WENV181899075
OGXT01064605
[OGXT] human gut metagenome; faeces
437
364
-
Gly
TCC
[ENA]
¢þ
>W141229805
BARR01000033
Bacillota
Moorella thermoacetica Y72 [BARR]
32541
32614
+
Gly
TCC
[ENA]
¡û
>WENV182331674
OHZI01024643
[OHZI] human gut metagenome; feces
47
120
+
Gly
TCC
[ENA]
¢þ
>WENV182374299
OIDB01000071
[OIDB] human gut metagenome; feces
43050
42977
-
Gly
TCC
[ENA]
¢þ
>WENV182387060
OIDZ01026354
[OIDZ] human gut metagenome; feces
594
521
-
Gly
TCC
[ENA]
¢þ
>WENV182522982
OIWS01002839
[OIWS] human gut metagenome; faeces
1939
2012
+
Gly
TCC
[ENA]
¢þ
>WENV182714003
OJPG01017606
[OJPG] human gut metagenome; stool sample
160
233
+
Gly
TCC
[ENA]
¢þ
>WENV182724935
OJPS01045328
[OJPS] human gut metagenome; stool sample
796
723
-
Gly
TCC
[ENA]
¢þ
>WENV183143496
OLOK01054026
[OLOK] human gut metagenome; faeces
647
574
-
Gly
TCC
[ENA]
¢þ
>WENV183154501
OLOR01005388
[OLOR] human gut metagenome; faeces
4953
5026
+
Gly
TCC
[ENA]
¢þ
>WENV183194394
OLPS01086039
[OLPS] human gut metagenome; faeces
491
418
-
Gly
TCC
[ENA]
¢þ
>WENV183196145
OLPU01000205
[OLPU] human gut metagenome; faeces
54312
54239
-
Gly
TCC
[ENA]
¢þ
>WENV183243844
OLRD01001257
[OLRD] human gut metagenome; faeces
15190
15117
-
Gly
TCC
[ENA]
¢þ
>WENV183347748
OLWT01036823
[OLWT] human gut metagenome; feces
166
93
-
Gly
TCC
[ENA]
¢þ
>WENV183385225
OLYN01046796
[OLYN] human gut metagenome; feces
418
491
+
Gly
TCC
[ENA]
¢þ
>WENV183687453
ORMF011147462
[ORMF] groundwater metagenome; groundwater
1227
1300
+
Gly
TCC
[ENA]
¢þ
>WENV183809178
PVBE011362664
[PVBE] marine metagenome; water
16890
16817
-
Gly
TCC
[ENA]
¢þ
>WENV170646651
JQIA01000761
[JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead
15209
15136
-
Gly
TCC
[ENA]
¢þ
>WENV170671694
LAHU01132750
[LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from
617
544
-
Gly
TCC
[ENA]
¢þ
>WENV170968885
MTKW01016293
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1570
1643
+
Gly
TCC
[ENA]
¢þ
>WENV170977414
MTKZ01022705
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
15996
16069
+
Gly
TCC
[ENA]
¢þ
>C191073421
CP031054
Bacillota
Moorella thermoacetica 39073-HH [CP031054]
547589
547662
+
Gly
TCC
-
¡û
>W09100944
AADT03000032
Bacillota
Moorella thermoacetica ATCC 39073 [AADT]
26618
26545
-
Gly
TCC
[ENA]
¡û
>W1911702300
QOCQ01000007
Alphaproteobacteria
Rhodospirillaceae bacterium SYSU D60007 [QOCQ]
259
186
-
Gly
TCC
[ENA]
¡û
>W1911708752
QOZR01000015
Alphaproteobacteria
Rhodospirillaceae bacterium SYSU D60014 [QOZR]
320
247
-
Gly
TCC
[ENA]
¡û
>W1911708807
QOZS01000125
Alphaproteobacteria
Rhodospirillaceae bacterium SYSU D60015 [QOZS]
316
243
-
Gly
TCC
[ENA]
¡û
>SRA1014089
SRR023821.92595
Pru Toh Daeng peat swamp (SRP001114)
107
34
-
Gly
TCC
[SRA]
>SRA1014099
SRR023821.96866
Pru Toh Daeng peat swamp (SRP001114)
107
34
-
Gly
TCC
[SRA]
>SRA1014100
SRR023821.96927
Pru Toh Daeng peat swamp (SRP001114)
107
34
-
Gly
TCC
[SRA]
>C151094350
CP012369
Bacillota
Moorella thermoacetica DSM 521 [CP012369]
455175
455248
+
Gly
TCC
-
¡û
>C151094400
CP012370
Bacillota
Moorella thermoacetica DSM 2955 [CP012370]
539062
539135
+
Gly
TCC
-
¡û
>C151098148
FO538765
Alphaproteobacteria
Magnetospira sp. QH-2 [FO538765]
2811993
2811920
-
Gly
TCC
[Ensembl]
¡û
>ENV09003664
ADGO01124688
Compost metagenome contig00001
386
459
+
Gly
TCC
[ENA]
¡û
>W1710598490
FTOA01000002
Alphaproteobacteria
Insolitispirillum peregrinum [FTOA]
723143
723216
+
Gly
TCC
[ENA]
¡û
Identical group No.816039 (1 seq.)
>SRA1013968
SRR023821.13197
Pru Toh Daeng peat swamp (SRP001114)
117
46
-
Gly
TCC
[SRA]
Identical group No.816040 (2 seq.)
>SRA1013980
SRR023821.17417
Pru Toh Daeng peat swamp (SRP001114)
208
137
-
Gly
TCC
[SRA]
>SRA1014041
SRR023821.49601
Pru Toh Daeng peat swamp (SRP001114)
208
137
-
Gly
TCC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK