tRNA genes clustered and arranged according to each identical group

Pru Toh Daeng peat swamp (SRP001114)

Anticodon = TCC

HIT: 4 Group(s).
Download Sequence Representative sequence of each cluster
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Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.734189 (1 seq.)
>SRA1013973 SRR023821.15319 Pru Toh Daeng peat swamp (SRP001114) 240 166 - Gly TCC [SRA]
Identical group No.781841 (63 seq.)
>W131180127 ARMX01000020 Alphaproteobacteria Novispirillum itersonii subsp. itersonii ATCC 12639 [ARMX] 1350 1277 - Gly TCC [ENA] ¡û
>W1711352282 MDDB01000004 Bacillota Moorella thermoacetica [MDDB] 126248 126321 + Gly TCC [ENA] ¡û
>W1711352297 MDDC01000001 Bacillota Moorella thermoacetica [MDDC] 81252 81325 + Gly TCC [ENA] ¡û
>W1711352377 MDDD01000007 Bacillota Moorella thermoacetica [MDDD] 18840 18767 - Gly TCC [ENA] ¡û
>W1711352437 MDDE01000007 Bacillota Moorella thermoacetica [MDDE] 113380 113307 - Gly TCC [ENA] ¡û
>W1711428550 MIHH01000009 Bacillota Moorella thermoacetica [MIHH] 84033 83960 - Gly TCC [ENA] ¡û
>W1711428581 MIIF01000005 Bacillota Moorella thermoacetica [MIIF] 94142 94069 - Gly TCC [ENA] ¡û
>C171055175 CP017019 Bacillota Moorella thermoacetica DSM 103132 [CP017019] 520288 520361 + Gly TCC - ¡û
>C171058945 CP017237 Bacillota Moorella thermoacetica DSM 103284 [CP017237] 441475 441548 + Gly TCC - ¡û
>C014164 CP000232 Bacillota Moorella thermoacetica [CP000232] 540866 540939 + Gly TCC [Ensembl] ¡û
>WENV180091552 MPMF02202613 [MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter 151 78 - Gly TCC [ENA] ¢þ
>WENV180349544 OBLO01058096 [OBLO] metagenome; feces 799 872 + Gly TCC [ENA] ¢þ
>WENV180351464 OBLQ010059168 [OBLQ] soil metagenome; soil 670 597 - Gly TCC [ENA] ¢þ
>WENV180539469 OCHP01028395 [OCHP] human gut metagenome; human gut 647 720 + Gly TCC [ENA] ¢þ
>WENV180541273 OCHR01084624 [OCHR] human gut metagenome; human gut 172 99 - Gly TCC [ENA] ¢þ
>WENV180585000 OCOJ01776881 [OCOJ] soil metagenome; soil 14 87 + Gly TCC [ENA] ¢þ
>WENV180699556 ODDM01001712 [ODDM] human metagenome; G_DNA_Stool 358 431 + Gly TCC [ENA] ¢þ
>WENV181072620 OEAN01009573 [OEAN] human metagenome; G_DNA_Stool 84 157 + Gly TCC [ENA] ¢þ
>WENV181144783 OEHO01091608 [OEHO] metagenome; unknown 179 106 - Gly TCC [ENA] ¢þ
>WENV181155433 OEID01162498 [OEID] soil metagenome; soil 107 34 - Gly TCC [ENA] ¢þ
>WENV181163773 OEIQ01245302 [OEIQ] soil metagenome; soil 51 124 + Gly TCC [ENA] ¢þ
>WENV181164771 OEIR01357684 [OEIR] soil metagenome; soil 49 122 + Gly TCC [ENA] ¢þ
>WENV181165876 OEIS01250029 [OEIS] soil metagenome; soil 212 139 - Gly TCC [ENA] ¢þ
>WENV181192381 OEPS010611529 [OEPS] soil metagenome; soil 241 168 - Gly TCC [ENA] ¢þ
>WENV181295537 OFHI01063076 [OFHI] soil metagenome; Clay 473 400 - Gly TCC [ENA] ¢þ
>WENV181295868 OFHJ01001438 [OFHJ] soil metagenome; Clay 290 217 - Gly TCC [ENA] ¢þ
>WENV181398405 OFSD01079405 [OFSD] human gut metagenome; human gut 111 184 + Gly TCC [ENA] ¢þ
>WENV181661800 OGOG01007217 [OGOG] human gut metagenome; faeces 4361 4434 + Gly TCC [ENA] ¢þ
>WENV181702746 OGPJ01000698 [OGPJ] human gut metagenome; faeces 638 711 + Gly TCC [ENA] ¢þ
>WENV181899075 OGXT01064605 [OGXT] human gut metagenome; faeces 437 364 - Gly TCC [ENA] ¢þ
>W141229805 BARR01000033 Bacillota Moorella thermoacetica Y72 [BARR] 32541 32614 + Gly TCC [ENA] ¡û
>WENV182331674 OHZI01024643 [OHZI] human gut metagenome; feces 47 120 + Gly TCC [ENA] ¢þ
>WENV182374299 OIDB01000071 [OIDB] human gut metagenome; feces 43050 42977 - Gly TCC [ENA] ¢þ
>WENV182387060 OIDZ01026354 [OIDZ] human gut metagenome; feces 594 521 - Gly TCC [ENA] ¢þ
>WENV182522982 OIWS01002839 [OIWS] human gut metagenome; faeces 1939 2012 + Gly TCC [ENA] ¢þ
>WENV182714003 OJPG01017606 [OJPG] human gut metagenome; stool sample 160 233 + Gly TCC [ENA] ¢þ
>WENV182724935 OJPS01045328 [OJPS] human gut metagenome; stool sample 796 723 - Gly TCC [ENA] ¢þ
>WENV183143496 OLOK01054026 [OLOK] human gut metagenome; faeces 647 574 - Gly TCC [ENA] ¢þ
>WENV183154501 OLOR01005388 [OLOR] human gut metagenome; faeces 4953 5026 + Gly TCC [ENA] ¢þ
>WENV183194394 OLPS01086039 [OLPS] human gut metagenome; faeces 491 418 - Gly TCC [ENA] ¢þ
>WENV183196145 OLPU01000205 [OLPU] human gut metagenome; faeces 54312 54239 - Gly TCC [ENA] ¢þ
>WENV183243844 OLRD01001257 [OLRD] human gut metagenome; faeces 15190 15117 - Gly TCC [ENA] ¢þ
>WENV183347748 OLWT01036823 [OLWT] human gut metagenome; feces 166 93 - Gly TCC [ENA] ¢þ
>WENV183385225 OLYN01046796 [OLYN] human gut metagenome; feces 418 491 + Gly TCC [ENA] ¢þ
>WENV183687453 ORMF011147462 [ORMF] groundwater metagenome; groundwater 1227 1300 + Gly TCC [ENA] ¢þ
>WENV183809178 PVBE011362664 [PVBE] marine metagenome; water 16890 16817 - Gly TCC [ENA] ¢þ
>WENV170646651 JQIA01000761 [JQIA] marine sediment metagenome; oil-polluted sediment collected from 3 locations (0.5 km, 0.7 km and 0.9 km) around wellhead 15209 15136 - Gly TCC [ENA] ¢þ
>WENV170671694 LAHU01132750 [LAHU] activated sludge metagenome; sample C-0; Zero hour mixed sludge faded in reactor as a methanogenic microbial inoculum from 617 544 - Gly TCC [ENA] ¢þ
>WENV170968885 MTKW01016293 [MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant 1570 1643 + Gly TCC [ENA] ¢þ
>WENV170977414 MTKZ01022705 [MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant 15996 16069 + Gly TCC [ENA] ¢þ
>C191073421 CP031054 Bacillota Moorella thermoacetica 39073-HH [CP031054] 547589 547662 + Gly TCC - ¡û
>W09100944 AADT03000032 Bacillota Moorella thermoacetica ATCC 39073 [AADT] 26618 26545 - Gly TCC [ENA] ¡û
>W1911702300 QOCQ01000007 Alphaproteobacteria Rhodospirillaceae bacterium SYSU D60007 [QOCQ] 259 186 - Gly TCC [ENA] ¡û
>W1911708752 QOZR01000015 Alphaproteobacteria Rhodospirillaceae bacterium SYSU D60014 [QOZR] 320 247 - Gly TCC [ENA] ¡û
>W1911708807 QOZS01000125 Alphaproteobacteria Rhodospirillaceae bacterium SYSU D60015 [QOZS] 316 243 - Gly TCC [ENA] ¡û
>SRA1014089 SRR023821.92595 Pru Toh Daeng peat swamp (SRP001114) 107 34 - Gly TCC [SRA]
>SRA1014099 SRR023821.96866 Pru Toh Daeng peat swamp (SRP001114) 107 34 - Gly TCC [SRA]
>SRA1014100 SRR023821.96927 Pru Toh Daeng peat swamp (SRP001114) 107 34 - Gly TCC [SRA]
>C151094350 CP012369 Bacillota Moorella thermoacetica DSM 521 [CP012369] 455175 455248 + Gly TCC - ¡û
>C151094400 CP012370 Bacillota Moorella thermoacetica DSM 2955 [CP012370] 539062 539135 + Gly TCC - ¡û
>C151098148 FO538765 Alphaproteobacteria Magnetospira sp. QH-2 [FO538765] 2811993 2811920 - Gly TCC [Ensembl] ¡û
>ENV09003664 ADGO01124688 Compost metagenome contig00001 386 459 + Gly TCC [ENA] ¡û
>W1710598490 FTOA01000002 Alphaproteobacteria Insolitispirillum peregrinum [FTOA] 723143 723216 + Gly TCC [ENA] ¡û
Identical group No.816039 (1 seq.)
>SRA1013968 SRR023821.13197 Pru Toh Daeng peat swamp (SRP001114) 117 46 - Gly TCC [SRA]
Identical group No.816040 (2 seq.)
>SRA1013980 SRR023821.17417 Pru Toh Daeng peat swamp (SRP001114) 208 137 - Gly TCC [SRA]
>SRA1014041 SRR023821.49601 Pru Toh Daeng peat swamp (SRP001114) 208 137 - Gly TCC [SRA]
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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