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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Pru Toh Daeng peat swamp (SRP001114)
Anticodon = TGC
HIT:
2 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.381070 (1 seq.)
>SRA1013900
SRR023819.624
Pru Toh Daeng peat swamp (SRP001114)
170
94
-
Ala
TGC
[SRA]
Identical group No.494494 (15 seq.)
>W131179258
ARMF01000009
Acidobacteriota
Bryobacterales bacterium KBS 96 KBS 96 [ARMF]
868445
868520
+
Ala
TGC
[ENA]
¡û
>C024898
CP000473
Acidobacteriota
Candidatus Solibacter usitatus [CP000473]
1249865
1249940
+
Ala
TGC
[Ensembl]
¡û
>C024902
CP000473
Acidobacteriota
Candidatus Solibacter usitatus [CP000473]
1971197
1971272
+
Ala
TGC
[Ensembl]
¡û
>WENV180692269
OCZS010435865
[OCZS] soil metagenome; soil
309
234
-
Ala
TGC
[ENA]
¢þ
>WENV181145450
OEHO01309263
[OEHO] metagenome; unknown
86
161
+
Ala
TGC
[ENA]
¢þ
>WENV181185010
OELA01000085
[OELA] metagenome; 1998
637
562
-
Ala
TGC
[ENA]
¢þ
>WENV181191397
OEPS010076236
[OEPS] soil metagenome; soil
468
393
-
Ala
TGC
[ENA]
¢þ
>WENV170004310
AGTN01633497
[AGTN] bioreactor metagenome; poplar biomass
306
381
+
Ala
TGC
[ENA]
¢þ
>WENV170707519
LNAP01023688
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
2386
2461
+
Ala
TGC
[ENA]
¢þ
>W141730271
JNIF01000003
Acidobacteriota
Bryobacter aggregatus MPL3 [JNIF]
851940
851865
-
Ala
TGC
[ENA]
¡û
>W141730277
JNIF01000004
Acidobacteriota
Bryobacter aggregatus MPL3 [JNIF]
258395
258470
+
Ala
TGC
[ENA]
¡û
>W09102611
AAIA01000029
Acidobacteriota
Candidatus Solibacter usitatus Ellin6076 [AAIA]
75256
75331
+
Ala
TGC
[ENA]
¡û
>SRA1014031
SRR023821.45425
Pru Toh Daeng peat swamp (SRP001114)
83
8
-
Ala
TGC
[SRA]
>SRA1014052
SRR023821.64226
Pru Toh Daeng peat swamp (SRP001114)
83
8
-
Ala
TGC
[SRA]
>ENV001123
AY534289
Environmental sample from ENV division of INSDC
172
247
+
Ala
TGC
[ENA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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