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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Pru Toh Daeng peat swamp (SRP001114)
Anticodon = TGG
HIT:
4 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.259784 (3 seq.)
>SRA1014086
SRR023821.89727
Pru Toh Daeng peat swamp (SRP001114)
22
99
+
Pro
TGG
[SRA]
>SRA1014087
SRR023821.91424
Pru Toh Daeng peat swamp (SRP001114)
22
99
+
Pro
TGG
[SRA]
>SRA1014090
SRR023821.92892
Pru Toh Daeng peat swamp (SRP001114)
21
98
+
Pro
TGG
[SRA]
Identical group No.296975 (7 seq.)
>WENV183684344
ORMF010697595
[ORMF] groundwater metagenome; groundwater
15067
15143
+
Pro
TGG
[ENA]
¢þ
>WENV170564268
CZKH01000029
[CZKH] soil metagenomic genome assembly CiPEHR-AK-2010-FBin.12, contig:; soil
317
393
+
Pro
TGG
[ENA]
¢þ
>WENV170564333
CZKJ01000048
[CZKJ] soil metagenome genome assembly CiPEHR-AK-2010-FBin.11, contig:; soil
6341
6265
-
Pro
TGG
[ENA]
¢þ
>WENV170564749
CZKY01000051
[CZKY] soil metagenome isolate CiPEHR-AK-2010_C2 genome assembly, contig:; soil
8156
8080
-
Pro
TGG
[ENA]
¢þ
>WENV170564816
CZLA01000170
[CZLA] soil metagenome genome assembly CiPEHR-AK-2010-FBin.22, contig:; soil
16058
16134
+
Pro
TGG
[ENA]
¢þ
>W1810046990
OKRE01000148
Acidobacteriota
Candidatus Sulfotelmatobacter sp. SbA7 SbA7 Peat soil MAG SbA7 [OKRE]
3692
3616
-
Pro
TGG
[ENA]
¡û
>SRA1014064
SRR023821.72523
Pru Toh Daeng peat swamp (SRP001114)
215
139
-
Pro
TGG
[SRA]
Identical group No.398830 (1 seq.)
>SRA1013931
SRR023820.49322
Pru Toh Daeng peat swamp (SRP001114)
87
11
-
Pro
TGG
[SRA]
Identical group No.585339 (2 seq.)
>WENV180585012
OCOJ01778199
[OCOJ] soil metagenome; soil
93
168
+
Pro
TGG
[ENA]
¢þ
>SRA1014001
SRR023821.34220
Pru Toh Daeng peat swamp (SRP001114)
262
187
-
Pro
TGG
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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