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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Pru Toh Daeng peat swamp (SRP001114)
Anticodon = TGT
HIT:
5 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.585330 (1 seq.)
>SRA1013974
SRR023821.15319
Pru Toh Daeng peat swamp (SRP001114)
133
58
-
Thr
TGT
[SRA]
Identical group No.585333 (2 seq.)
>WENV180018762
FTAI01001098
[FTAI] metagenome; soil
12412
12487
+
Thr
TGT
[ENA]
¢þ
>SRA1013981
SRR023821.18396
Pru Toh Daeng peat swamp (SRP001114)
209
134
-
Thr
TGT
[SRA]
Identical group No.585336 (3 seq.)
>WENV181184633
OEKN01000118
[OEKN] metagenome; 1998
1425
1350
-
Thr
TGT
[ENA]
¢þ
>WENV181185958
OEMI01000093
[OEMI] metagenome; 1998
929
1004
+
Thr
TGT
[ENA]
¢þ
>SRA1013993
SRR023821.29971
Pru Toh Daeng peat swamp (SRP001114)
108
183
+
Thr
TGT
[SRA]
Identical group No.674209 (2 seq.)
>WENV170710289
LNFM01001471
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
71237
71311
+
Thr
TGT
[ENA]
¢þ
>SRA1014018
SRR023821.41553
Pru Toh Daeng peat swamp (SRP001114)
146
220
+
Thr
TGT
[SRA]
Identical group No.734190 (1 seq.)
>SRA1014013
SRR023821.40040
Pru Toh Daeng peat swamp (SRP001114)
122
50
-
Thr
TGT
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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