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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Pru Toh Daeng peat swamp (SRP001114)
Anticodon = TTC
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.139322 (1 seq.)
>SRA1014027
SRR023821.43837
Pru Toh Daeng peat swamp (SRP001114)
129
43
-
Glu
TTC
[SRA]
Identical group No.318533 (2 seq.)
>WENV170662032
JXWV01180183
[JXWV] soil metagenome; rice field; organic FYM Plot
287
363
+
Glu
TTC
[ENA]
¢þ
>SRA1014011
SRR023821.39615
Pru Toh Daeng peat swamp (SRP001114)
198
122
-
Glu
TTC
[SRA]
Identical group No.391579 (1 seq.)
>SRA1014095
SRR023821.96235
Pru Toh Daeng peat swamp (SRP001114)
116
192
+
Glu
TTC
[SRA]
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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