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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Retroviridae
Anticodon = CCA
HIT:
3 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.681146 (5 seq.)
>WENV182646533
OJMB01012031
[OJMB] metagenome; surface
723
652
-
Trp
CCA
[ENA]
¢þ
>VRL0100051
M10671
Retroviridae
Avian sarcoma virus
1
75
+
Trp
CCA
[ENA]
¡û
>VRL0100054
M24808
Retroviridae
Rous sarcoma virus
1
75
+
Trp
CCA
[ENA]
¡û
>VRL181000666
M10671
Retroviridae
Avian sarcoma virus
1
75
+
Trp
CCA
[ENA]
¡û
>VRL181000669
M24808
Retroviridae
Rous sarcoma virus
1
75
+
Trp
CCA
[ENA]
¡û
Identical group No.762102 (1 seq.)
>VRL0100052
M17490
Retroviridae
Avian sarcoma virus
1
75
+
Trp
CCA
[ENA]
¡û
Identical group No.770906 (1 seq.)
>VRL181000667
M17490
Retroviridae
Avian sarcoma virus
1
75
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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