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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Retroviridae
Anticodon = GCC
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.803042 (15 seq.)
>WENV183637000
OOQC01074758
[OOQC] human gut metagenome; Biopsy from a wound at the foot
108
37
-
Gly
GCC
[ENA]
¢þ
>WENV183714672
PDWI01197405
[PDWI] oral metagenome; swab sample of gingival sulcus (mouth) from 29 year old lactating female Dolphin_Z
1
71
+
Gly
GCC
[ENA]
¢þ
>VRL0100053
M21527
Retroviridae
Moloney murine leukemia virus
1
74
+
Gly
GCC
[ENA]
¡û
>WENV170784878
MDSO01024865
[MDSO] gut metagenome; Stomach gut content
339
266
-
Gly
GCC
[ENA]
¢þ
>WENV170784936
MDSO01094189
[MDSO] gut metagenome; Stomach gut content
577
507
-
Gly
GCC
[ENA]
¢þ
>WENV170784939
MDSO01098535
[MDSO] gut metagenome; Stomach gut content
369
441
+
Gly
GCC
[ENA]
¢þ
>WENV170785198
MDSP01001578
[MDSP] gut metagenome; Stomach gut content
2340
2410
+
Gly
GCC
[ENA]
¢þ
>WENV170785674
MDSP01252689
[MDSP] gut metagenome; Stomach gut content
508
578
+
Gly
GCC
[ENA]
¢þ
>WENV170785946
MDSQ01060452
[MDSQ] gut metagenome; Hindgut content
1597
1525
-
Gly
GCC
[ENA]
¢þ
>WENV170785987
MDSQ01094078
[MDSQ] gut metagenome; Hindgut content
902
832
-
Gly
GCC
[ENA]
¢þ
>WENV170786069
MDSQ01172561
[MDSQ] gut metagenome; Hindgut content
68
140
+
Gly
GCC
[ENA]
¢þ
>WENV170786194
MDSQ01315808
[MDSQ] gut metagenome; Hindgut content
52
122
+
Gly
GCC
[ENA]
¢þ
>WENV170960158
MKWU01017216
[MKWU] sponge metagenome;
934
863
-
Gly
GCC
[ENA]
¢þ
>WENV170960530
MKWU01034349
[MKWU] sponge metagenome;
2035
2106
+
Gly
GCC
[ENA]
¢þ
>VRL181000668
M21527
Retroviridae
Moloney murine leukemia virus
1
74
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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