This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Rhodophyta
Anticodon = ACG
HIT:
39 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.297420 (12 seq.)
>WENV170022137
BCQK01000659
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
4213
4140
-
Arg
ACG
[ENA]
¢þ
>WENV170023584
BCQL01000099
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
5319
5395
+
Arg
ACG
[ENA]
¢þ
>WENV170025394
BCQL01314159
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
270
197
-
Arg
ACG
[ENA]
¢þ
>CHL1810011898
KJ513670
Rhodophyta
Membranoptera weeksiae (KJ513670)
38192
38267
+
Arg
ACG
[ENA]
¡û
>CHL1810027987
KU892652
Rhodophyta
Kappaphycus alvarezii (KU892652)
37101
37174
+
Arg
ACG
[ENA]
¡û
>CHL1810049837
MF101411
Rhodophyta
Acrosorium ciliolatum (MF101411)
168238
168165
-
Arg
ACG
[ENA]
¡û
>CHL1810050010
MF101420
Rhodophyta
Symphyocladia dendroidea (MF101420)
164191
164116
-
Arg
ACG
[ENA]
¡û
>CHL1810050210
MF101428
Rhodophyta
Polysiphonia stricta (MF101428)
161280
161205
-
Arg
ACG
[ENA]
¡û
>CHL1810050462
MF101441
Rhodophyta
Spyridia filamentosa (MF101441)
167450
167377
-
Arg
ACG
[ENA]
¡û
>CHL1810050487
MF101442
Rhodophyta
Thuretia quercifolia (MF101442)
166492
166419
-
Arg
ACG
[ENA]
¡û
>CHL1810050513
MF101443
Rhodophyta
Dasyclonium flaccidum (MF101443)
162458
162383
-
Arg
ACG
[ENA]
¡û
>CHL1810050664
MF101449
Rhodophyta
Kuetzingia canaliculata (MF101449)
169935
169860
-
Arg
ACG
[ENA]
¡û
Identical group No.297511 (1 seq.)
>CHL1810049889
MF101415
Rhodophyta
Osmundaria fimbriata (MF101415)
174086
174011
-
Arg
ACG
[ENA]
¡û
Identical group No.297520 (5 seq.)
>CHL1810050135
MF101425
Rhodophyta
Polysiphonia brodiei (MF101425)
161993
161917
-
Arg
ACG
[ENA]
¡û
>CHL1810050262
MF101432
Rhodophyta
Polysiphonia infestans (MF101432)
157653
157578
-
Arg
ACG
[ENA]
¡û
>CHL1810050385
MF101438
Rhodophyta
Polysiphonia scopulorum (MF101438)
160228
160153
-
Arg
ACG
[ENA]
¡û
>CHL1810050739
MF101454
Rhodophyta
Polysiphonia schneideri (MF101454)
155404
155329
-
Arg
ACG
[ENA]
¡û
>CHL1810050816
MF101467
Rhodophyta
Tolypiocladia glomerulata (MF101467)
158015
157940
-
Arg
ACG
[ENA]
¡û
Identical group No.297545 (1 seq.)
>CHL1830002156
MF101416
Rhodophyta
Caloglossa monosticha (MF101416)
157339
157266
-
Arg
ACG
[ENA]
¡û
Identical group No.306705 (3 seq.)
>WENV181406161
OGCG01000007
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
89511
89438
-
Arg
ACG
[ENA]
¢þ
>CHL090100038
AB002583
Rhodophyta
Cyanidioschyzon merolae
57538
57611
+
Arg
ACG
[ENA]
¡û
>CHL090101452
AY286123
Rhodophyta
Cyanidioschyzon merolae strain DBV201
8119
8046
-
Arg
ACG
[ENA]
¡û
Identical group No.319004 (11 seq.)
>WENV181393160
OFRX01062057
[OFRX] seawater metagenome; seawater
178
251
+
Arg
ACG
[ENA]
¢þ
>WENV183629540
OOGP01064081
[OOGP] marine metagenome; seawater
178
251
+
Arg
ACG
[ENA]
¢þ
>CHL1810000548
AP012987
Rhodophyta
Porphyridium purpureum (AP012987)
49830
49903
+
Arg
ACG
[ENA]
¡û
>CHL1810006808
KC153978
Rhodophyta
Calliarthron tuberculosum (KC153978)
36642
36715
+
Arg
ACG
[ENA]
¡û
>CHL1810014962
KM462877
Viridiplantae
Gloeotilopsis sterilis (KM462877)
111029
110956
-
Arg
ACG
[ENA]
¡û
>CHL1810015085
KM462881
Viridiplantae
Interfilum terricola (KM462881)
160019
159946
-
Arg
ACG
[ENA]
¡û
>CHL1810015145
KM462883
Viridiplantae
Geminella minor (KM462883)
109391
109318
-
Arg
ACG
[ENA]
¡û
>CHL1810015203
KM462885
Viridiplantae
Dicloster acuatus (KM462885)
120396
120323
-
Arg
ACG
[ENA]
¡û
>CHL090100348
AF166114
Viridiplantae
Mesostigma viride
89544
89617
+
Arg
ACG
[ENA]
¡û
>CHL090100354
AF166114
Viridiplantae
Mesostigma viride
112444
112371
-
Arg
ACG
[ENA]
¡û
>CHL090101945
DQ291132
Viridiplantae
Oltmannsiellopsis viridis
55835
55761
-
Arg
ACG
[ENA]
¡û
Identical group No.319066 (1 seq.)
>CHL1810045161
KY709208
Rhodophyta
Boldia erythrosiphon UTEX LB2858 (KY709208)
15626
15553
-
Arg
ACG
[ENA]
¡û
Identical group No.319076 (1 seq.)
>CHL1810050236
MF101430
Rhodophyta
Bryothamnion seaforthii (MF101430)
167603
167528
-
Arg
ACG
[ENA]
¡û
Identical group No.319079 (1 seq.)
>CHL1810050360
MF101437
Rhodophyta
Melanothamnus harveyi (MF101437)
157195
157119
-
Arg
ACG
[ENA]
¡û
Identical group No.323939 (4 seq.)
>CHL1810008220
KC464603
Rhodophyta
Pyropia haitanensis (KC464603)
142265
142190
-
Arg
ACG
[ENA]
¡û
>CHL1810058635
MG598531
Rhodophyta
Grateloupia filicina (MG598531)
78042
78115
+
Arg
ACG
[ENA]
¡û
>CHL090100878
AP006715
Rhodophyta
Porphyra yezoensis
140424
140349
-
Arg
ACG
[ENA]
¡û
>CHL090103171
U38804
Rhodophyta
Porphyra purpurea
138954
138879
-
Arg
ACG
[ENA]
¡û
Identical group No.335945 (1 seq.)
>CHL1830002196
MF101434
Rhodophyta
Herposiphonia versicolor (MF101434)
158856
158781
-
Arg
ACG
[ENA]
¡û
Identical group No.347685 (4 seq.)
>CHL1810049862
MF101413
Rhodophyta
Periphykon beckeri (MF101413)
160529
160454
-
Arg
ACG
[ENA]
¡û
>CHL1810050084
MF101423
Rhodophyta
Polysiphonia sertularioides (MF101423)
158216
158141
-
Arg
ACG
[ENA]
¡û
>CHL1810050185
MF101427
Rhodophyta
Polysiphonia elongata (MF101427)
160477
160401
-
Arg
ACG
[ENA]
¡û
>CHL1810050287
MF101433
Rhodophyta
Vertebrata isogona (MF101433)
159694
159621
-
Arg
ACG
[ENA]
¡û
Identical group No.347686 (1 seq.)
>CHL1810050411
MF101439
Rhodophyta
Vertebrata australis (MF101439)
159692
159619
-
Arg
ACG
[ENA]
¡û
Identical group No.347687 (1 seq.)
>CHL1810050689
MF101450
Rhodophyta
Cliftonaea pectinata (MF101450)
166846
166771
-
Arg
ACG
[ENA]
¡û
Identical group No.347714 (1 seq.)
>CHL1830002174
MF101422
Rhodophyta
Caloglossa beccarii (MF101422)
157412
157339
-
Arg
ACG
[ENA]
¡û
Identical group No.359190 (1 seq.)
>CHL1810045186
KY709209
Rhodophyta
Bulboplastis apyrenoidosa NIES-2742 (KY709209)
102597
102524
-
Arg
ACG
[ENA]
¡û
Identical group No.359215 (1 seq.)
>CHL1830002159
MF101417
Rhodophyta
Bostrychia tenella (MF101417)
162943
162868
-
Arg
ACG
[ENA]
¡û
Identical group No.370832 (1 seq.)
>CHL1810050160
MF101426
Rhodophyta
Vertebrata thuyoides (MF101426)
161221
161148
-
Arg
ACG
[ENA]
¡û
Identical group No.370835 (1 seq.)
>CHL1810050436
MF101440
Rhodophyta
Ophidocladus simpliciusculus (MF101440)
160680
160605
-
Arg
ACG
[ENA]
¡û
Identical group No.379968 (1 seq.)
>CHL1830002163
MF101418
Rhodophyta
Caloglossa intermedia (MF101418)
158259
158186
-
Arg
ACG
[ENA]
¡û
Identical group No.379969 (2 seq.)
>CHL1830002166
MF101419
Rhodophyta
Bostrychia moritziana (MF101419)
163953
163878
-
Arg
ACG
[ENA]
¡û
>CHL1830002225
MF101447
Rhodophyta
Thaumatella adunca (MF101447)
161794
161719
-
Arg
ACG
[ENA]
¡û
Identical group No.388456 (1 seq.)
>CHL1810050638
MF101448
Rhodophyta
Lophocladia kuetzingii (MF101448)
167502
167427
-
Arg
ACG
[ENA]
¡û
Identical group No.388470 (2 seq.)
>CHL1830002142
MF101408
Rhodophyta
Dipterocladia arabiensis (MF101408)
162461
162388
-
Arg
ACG
[ENA]
¡û
>CHL1830002199
MF101436
Rhodophyta
Dasya naccarioides (MF101436)
162931
162858
-
Arg
ACG
[ENA]
¡û
Identical group No.393202 (1 seq.)
>CHL090100260
AF022186
Rhodophyta
Cyanidium caldarium
97516
97440
-
Arg
ACG
[ENA]
¡û
Identical group No.397560 (1 seq.)
>CHL1810038736
KY018922
Rhodophyta
Gracilaria changii (KY018922)
147184
147111
-
Arg
ACG
[ENA]
¡û
Identical group No.397563 (1 seq.)
>CHL1810038780
KY033529
Rhodophyta
Sheathia arcuata (KY033529)
41723
41796
+
Arg
ACG
[ENA]
¡û
Identical group No.397574 (1 seq.)
>CHL1810049811
MF101410
Rhodophyta
Laurenciella marilzae (MF101410)
163927
163854
-
Arg
ACG
[ENA]
¡û
Identical group No.397576 (1 seq.)
>CHL1810050790
MF101465
Rhodophyta
Digenea simplex (MF101465)
167076
167001
-
Arg
ACG
[ENA]
¡û
Identical group No.397587 (1 seq.)
>CHL1810060915
MH396013
Rhodophyta
Gracilaria vermiculophylla (MH396013)
170248
170175
-
Arg
ACG
[ENA]
¡û
Identical group No.406303 (1 seq.)
>CHL1810050538
MF101444
Rhodophyta
Dipterosiphonia australica (MF101444)
160876
160801
-
Arg
ACG
[ENA]
¡û
Identical group No.406315 (1 seq.)
>CHL1830002171
MF101421
Rhodophyta
Bostrychia simpliciuscula (MF101421)
159704
159629
-
Arg
ACG
[ENA]
¡û
Identical group No.414373 (1 seq.)
>CHL1810024539
KU179794
Rhodophyta
Gracilariopsis lemaneiformis (KU179794)
142306
142233
-
Arg
ACG
[ENA]
¡û
Identical group No.414381 (1 seq.)
>CHL1810039450
KY083067
Rhodophyta
Compsopogon caeruleus (KY083067)
38304
38231
-
Arg
ACG
[ENA]
¡û
Identical group No.428379 (1 seq.)
>CHL1830002219
MF101445
Rhodophyta
Sonderella linearis (MF101445)
162011
161936
-
Arg
ACG
[ENA]
¡û
Identical group No.438812 (1 seq.)
>CHL1810050764
MF101455
Rhodophyta
Dictyomenia sonderi (MF101455)
161012
160937
-
Arg
ACG
[ENA]
¡û
Identical group No.438821 (1 seq.)
>CHL1830002222
MF101446
Rhodophyta
Gredgaria maugeana (MF101446)
160245
160170
-
Arg
ACG
[ENA]
¡û
Identical group No.441245 (1 seq.)
>CHL090101570
AY673996
Rhodophyta
Gracilaria tenuistipitata var. liui
42911
42984
+
Arg
ACG
[ENA]
¡û
Identical group No.445243 (2 seq.)
>CHL1810050109
MF101424
Rhodophyta
Rhodomela confervoides (MF101424)
167805
167730
-
Arg
ACG
[ENA]
¡û
>CHL1810050714
MF101452
Rhodophyta
Taenioma perpusillum (MF101452)
155999
155926
-
Arg
ACG
[ENA]
¡û
Identical group No.450720 (1 seq.)
>CHL1810010843
KF861575
Rhodophyta
Gracilaria salicornia (KF861575)
39146
39219
+
Arg
ACG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK