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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Rhodophyta
Anticodon = CAA
HIT:
59 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.40430 (1 seq.)
>CHL1810049770
MF101408
Rhodophyta
Dipterocladia arabiensis (MF101408)
70308
70221
-
Leu
CAA
[ENA]
¡û
Identical group No.112145 (1 seq.)
>CHL1810050470
MF101441
Rhodophyta
Spyridia filamentosa (MF101441)
74420
74336
-
Leu
CAA
[ENA]
¡û
Identical group No.162470 (1 seq.)
>CHL1810050521
MF101443
Rhodophyta
Dasyclonium flaccidum (MF101443)
70588
70503
-
Leu
CAA
[ENA]
¡û
Identical group No.170929 (1 seq.)
>CHL090100268
AF022186
Rhodophyta
Cyanidium caldarium
31348
31263
-
Leu
CAA
[ENA]
¡û
Identical group No.171606 (1 seq.)
>CHL1810038745
KY018922
Rhodophyta
Gracilaria changii (KY018922)
53561
53479
-
Leu
CAA
[ENA]
¡û
Identical group No.171612 (1 seq.)
>CHL1810060924
MH396013
Rhodophyta
Gracilaria vermiculophylla (MH396013)
76357
76275
-
Leu
CAA
[ENA]
¡û
Identical group No.174125 (1 seq.)
>CHL1810024548
KU179794
Rhodophyta
Gracilariopsis lemaneiformis (KU179794)
47778
47696
-
Leu
CAA
[ENA]
¡û
Identical group No.178449 (1 seq.)
>CHL090101579
AY673996
Rhodophyta
Gracilaria tenuistipitata var. liui
136858
136940
+
Leu
CAA
[ENA]
¡û
Identical group No.179824 (1 seq.)
>CHL1810010852
KF861575
Rhodophyta
Gracilaria salicornia (KF861575)
133095
133177
+
Leu
CAA
[ENA]
¡û
Identical group No.185412 (1 seq.)
>CHL1810011907
KJ513670
Rhodophyta
Membranoptera weeksiae (KJ513670)
130582
130666
+
Leu
CAA
[ENA]
¡û
Identical group No.185418 (1 seq.)
>CHL1810049921
MF101416
Rhodophyta
Caloglossa monosticha (MF101416)
66331
66250
-
Leu
CAA
[ENA]
¡û
Identical group No.185420 (1 seq.)
>CHL1810050143
MF101425
Rhodophyta
Polysiphonia brodiei (MF101425)
68848
68767
-
Leu
CAA
[ENA]
¡û
Identical group No.187397 (3 seq.)
>WENV181406154
OGCG01000007
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
147130
147211
+
Leu
CAA
[ENA]
¢þ
>CHL090100048
AB002583
Rhodophyta
Cyanidioschyzon merolae
149891
149810
-
Leu
CAA
[ENA]
¡û
>CHL090101430
AY286123
Rhodophyta
Cyanidioschyzon merolae strain DBV201
65439
65520
+
Leu
CAA
[ENA]
¡û
Identical group No.189822 (1 seq.)
>CHL1810050368
MF101437
Rhodophyta
Melanothamnus harveyi (MF101437)
67181
67098
-
Leu
CAA
[ENA]
¡û
Identical group No.190883 (1 seq.)
>CHL090103180
U38804
Rhodophyta
Porphyra purpurea
39864
39783
-
Leu
CAA
[ENA]
¡û
Identical group No.193301 (1 seq.)
>CHL1810006818
KC153978
Rhodophyta
Calliarthron tuberculosum (KC153978)
132486
132569
+
Leu
CAA
[ENA]
¡û
Identical group No.193313 (1 seq.)
>CHL1810050019
MF101420
Rhodophyta
Symphyocladia dendroidea (MF101420)
69298
69217
-
Leu
CAA
[ENA]
¡û
Identical group No.193314 (1 seq.)
>CHL1810050320
MF101434
Rhodophyta
Herposiphonia versicolor (MF101434)
68663
68582
-
Leu
CAA
[ENA]
¡û
Identical group No.195728 (1 seq.)
>CHL1810050068
MF101422
Rhodophyta
Caloglossa beccarii (MF101422)
66589
66508
-
Leu
CAA
[ENA]
¡û
Identical group No.195729 (1 seq.)
>CHL1810050092
MF101423
Rhodophyta
Polysiphonia sertularioides (MF101423)
68469
68386
-
Leu
CAA
[ENA]
¡û
Identical group No.195730 (2 seq.)
>CHL1810050168
MF101426
Rhodophyta
Vertebrata thuyoides (MF101426)
68798
68717
-
Leu
CAA
[ENA]
¡û
>CHL1810050419
MF101439
Rhodophyta
Vertebrata australis (MF101439)
68880
68797
-
Leu
CAA
[ENA]
¡û
Identical group No.195731 (1 seq.)
>CHL1810050698
MF101450
Rhodophyta
Cliftonaea pectinata (MF101450)
73590
73509
-
Leu
CAA
[ENA]
¡û
Identical group No.195732 (1 seq.)
>CHL1810058645
MG598531
Rhodophyta
Grateloupia filicina (MG598531)
179437
179518
+
Leu
CAA
[ENA]
¡û
Identical group No.198351 (1 seq.)
>CHL1810049946
MF101417
Rhodophyta
Bostrychia tenella (MF101417)
70772
70691
-
Leu
CAA
[ENA]
¡û
Identical group No.200817 (1 seq.)
>CHL1810050445
MF101440
Rhodophyta
Ophidocladus simpliciusculus (MF101440)
69442
69361
-
Leu
CAA
[ENA]
¡û
Identical group No.200818 (1 seq.)
>CHL1810050496
MF101442
Rhodophyta
Thuretia quercifolia (MF101442)
72470
72389
-
Leu
CAA
[ENA]
¡û
Identical group No.202738 (1 seq.)
>CHL1810049968
MF101418
Rhodophyta
Caloglossa intermedia (MF101418)
66851
66770
-
Leu
CAA
[ENA]
¡û
Identical group No.202739 (1 seq.)
>CHL1810050295
MF101433
Rhodophyta
Vertebrata isogona (MF101433)
68802
68721
-
Leu
CAA
[ENA]
¡û
Identical group No.202740 (1 seq.)
>CHL1810050621
MF101447
Rhodophyta
Thaumatella adunca (MF101447)
70292
70210
-
Leu
CAA
[ENA]
¡û
Identical group No.202741 (1 seq.)
>CHL1810050747
MF101454
Rhodophyta
Polysiphonia schneideri (MF101454)
66219
66137
-
Leu
CAA
[ENA]
¡û
Identical group No.204405 (1 seq.)
>CHL1810027997
KU892652
Rhodophyta
Kappaphycus alvarezii (KU892652)
130164
130245
+
Leu
CAA
[ENA]
¡û
Identical group No.204408 (1 seq.)
>CHL1810049872
MF101413
Rhodophyta
Periphykon beckeri (MF101413)
69873
69792
-
Leu
CAA
[ENA]
¡û
Identical group No.205468 (2 seq.)
>CHL1810008231
KC464603
Rhodophyta
Pyropia haitanensis (KC464603)
39905
39824
-
Leu
CAA
[ENA]
¡û
>CHL090100889
AP006715
Rhodophyta
Porphyra yezoensis
39940
39859
-
Leu
CAA
[ENA]
¡û
Identical group No.206425 (1 seq.)
>CHL1810038790
KY033529
Rhodophyta
Sheathia arcuata (KY033529)
140129
140212
+
Leu
CAA
[ENA]
¡û
Identical group No.206427 (1 seq.)
>CHL1810050219
MF101428
Rhodophyta
Polysiphonia stricta (MF101428)
69952
69869
-
Leu
CAA
[ENA]
¡û
Identical group No.206428 (1 seq.)
>CHL1810050824
MF101467
Rhodophyta
Tolypiocladia glomerulata (MF101467)
68073
67991
-
Leu
CAA
[ENA]
¡û
Identical group No.208243 (1 seq.)
>CHL1810049845
MF101411
Rhodophyta
Acrosorium ciliolatum (MF101411)
75632
75551
-
Leu
CAA
[ENA]
¡û
Identical group No.208245 (1 seq.)
>CHL1810050044
MF101421
Rhodophyta
Bostrychia simpliciuscula (MF101421)
68225
68144
-
Leu
CAA
[ENA]
¡û
Identical group No.208246 (1 seq.)
>CHL1810050546
MF101444
Rhodophyta
Dipterosiphonia australica (MF101444)
69034
68953
-
Leu
CAA
[ENA]
¡û
Identical group No.211476 (1 seq.)
>CHL1810050270
MF101432
Rhodophyta
Polysiphonia infestans (MF101432)
67643
67562
-
Leu
CAA
[ENA]
¡û
Identical group No.212979 (1 seq.)
>CHL1810000545
AP012987
Rhodophyta
Porphyridium purpureum (AP012987)
12139
12220
+
Leu
CAA
[ENA]
¡û
Identical group No.212993 (1 seq.)
>CHL1810050571
MF101445
Rhodophyta
Sonderella linearis (MF101445)
70090
70009
-
Leu
CAA
[ENA]
¡û
Identical group No.215326 (1 seq.)
>CHL1810049794
MF101409
Rhodophyta
Platysiphonia delicata (MF101409)
70497
70415
-
Leu
CAA
[ENA]
¡û
Identical group No.215327 (1 seq.)
>CHL1810050193
MF101427
Rhodophyta
Polysiphonia elongata (MF101427)
69398
69315
-
Leu
CAA
[ENA]
¡û
Identical group No.215328 (1 seq.)
>CHL1810050596
MF101446
Rhodophyta
Gredgaria maugeana (MF101446)
69307
69226
-
Leu
CAA
[ENA]
¡û
Identical group No.215330 (1 seq.)
>CHL1810050773
MF101455
Rhodophyta
Dictyomenia sonderi (MF101455)
70239
70158
-
Leu
CAA
[ENA]
¡û
Identical group No.216714 (1 seq.)
>CHL1810049993
MF101419
Rhodophyta
Bostrychia moritziana (MF101419)
69638
69557
-
Leu
CAA
[ENA]
¡û
Identical group No.216716 (1 seq.)
>CHL1810050722
MF101452
Rhodophyta
Taenioma perpusillum (MF101452)
65814
65733
-
Leu
CAA
[ENA]
¡û
Identical group No.217855 (1 seq.)
>CHL1810050118
MF101424
Rhodophyta
Rhodomela confervoides (MF101424)
70676
70594
-
Leu
CAA
[ENA]
¡û
Identical group No.217856 (1 seq.)
>CHL1810050394
MF101438
Rhodophyta
Polysiphonia scopulorum (MF101438)
69269
69188
-
Leu
CAA
[ENA]
¡û
Identical group No.219479 (1 seq.)
>CHL1810049898
MF101415
Rhodophyta
Osmundaria fimbriata (MF101415)
75831
75749
-
Leu
CAA
[ENA]
¡û
Identical group No.220556 (1 seq.)
>CHL1810045163
KY709208
Rhodophyta
Boldia erythrosiphon UTEX LB2858 (KY709208)
13925
13845
-
Leu
CAA
[ENA]
¡û
Identical group No.220557 (1 seq.)
>CHL1810050245
MF101430
Rhodophyta
Bryothamnion seaforthii (MF101430)
75521
75439
-
Leu
CAA
[ENA]
¡û
Identical group No.224677 (1 seq.)
>CHL1810050647
MF101448
Rhodophyta
Lophocladia kuetzingii (MF101448)
69717
69635
-
Leu
CAA
[ENA]
¡û
Identical group No.225269 (1 seq.)
>CHL1810049820
MF101410
Rhodophyta
Laurenciella marilzae (MF101410)
72035
71955
-
Leu
CAA
[ENA]
¡û
Identical group No.225270 (1 seq.)
>CHL1810050799
MF101465
Rhodophyta
Digenea simplex (MF101465)
72998
72918
-
Leu
CAA
[ENA]
¡û
Identical group No.226270 (1 seq.)
>CHL1810039452
KY083067
Rhodophyta
Compsopogon caeruleus (KY083067)
36759
36679
-
Leu
CAA
[ENA]
¡û
Identical group No.226730 (1 seq.)
>CHL1810050672
MF101449
Rhodophyta
Kuetzingia canaliculata (MF101449)
74193
74112
-
Leu
CAA
[ENA]
¡û
Identical group No.230489 (1 seq.)
>CHL1810045187
KY709209
Rhodophyta
Bulboplastis apyrenoidosa NIES-2742 (KY709209)
97520
97441
-
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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