tRNA genes clustered and arranged according to each identical group

Rhodophyta

Anticodon = CAT

HIT: 39 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
 Sequence ID Genome ID
(or Accession No.)		 Phylum/Class
(Sample source for ENV)		 Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.50743 (3 seq.)
>WENV181406152 OGCG01000007 [OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA 133773 133861 + Met CAT [ENA] ¢þ
>CHL090100060 AB002583 Rhodophyta Cyanidioschyzon merolae 13310 13222 - Met CAT [ENA] ¡û
>CHL090101428 AY286123 Rhodophyta Cyanidioschyzon merolae strain DBV201 52069 52157 + Met CAT [ENA] ¡û
Identical group No.53210 (3 seq.)
>CHL1810008232 KC464603 Rhodophyta Pyropia haitanensis (KC464603) 34415 34327 - Met CAT [ENA] ¡û
>CHL090100890 AP006715 Rhodophyta Porphyra yezoensis 34497 34409 - Met CAT [ENA] ¡û
>CHL090103181 U38804 Rhodophyta Porphyra purpurea 34372 34284 - Met CAT [ENA] ¡û
Identical group No.58113 (1 seq.)
>CHL1810045172 KY709209 Rhodophyta Bulboplastis apyrenoidosa NIES-2742 (KY709209) 574234 574320 + Met CAT [ENA] ¡û
Identical group No.76159 (1 seq.)
>CHL1810045153 KY709208 Rhodophyta Boldia erythrosiphon UTEX LB2858 (KY709208) 130283 130197 - Met CAT [ENA] ¡û
Identical group No.84998 (1 seq.)
>CHL1810000563 AP012987 Rhodophyta Porphyridium purpureum (AP012987) 114922 114837 - Met CAT [ENA] ¡û
Identical group No.106839 (1 seq.)
>CHL1810039442 KY083067 Rhodophyta Compsopogon caeruleus (KY083067) 147537 147451 - Met CAT [ENA] ¡û
Identical group No.139739 (1 seq.)
>CHL090100259 AF022186 Rhodophyta Cyanidium caldarium 109484 109401 - Met CAT [ENA] ¡û
Identical group No.281295 (12 seq.)
>WENV180595742 OCPF01022402 [OCPF] marine metagenome; ENVO.00002150 336 263 - fMet CAT [ENA] ¢þ
>WENV170022112 BCQK01000274 [BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama 3918 3843 - Met CAT [ENA] ¢þ
>WENV170024477 BCQL01065327 [BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa 82 7 - Met CAT [ENA] ¢þ
>WENV170025431 BCQL01334280 [BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa 82 7 - Met CAT [ENA] ¢þ
>WENV170025634 BCQL01362595 [BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa 38 113 + Met CAT [ENA] ¢þ
>CHL1810049769 MF101408 Rhodophyta Dipterocladia arabiensis (MF101408) 106198 106123 - Met CAT [ENA] ¡û
>CHL1810049819 MF101410 Rhodophyta Laurenciella marilzae (MF101410) 108134 108061 - Met CAT [ENA] ¡û
>CHL1810050319 MF101434 Rhodophyta Herposiphonia versicolor (MF101434) 104205 104131 - Met CAT [ENA] ¡û
>CHL1810050343 MF101436 Rhodophyta Dasya naccarioides (MF101436) 106626 106551 - Met CAT [ENA] ¡û
>CHL1810050646 MF101448 Rhodophyta Lophocladia kuetzingii (MF101448) 105413 105340 - Met CAT [ENA] ¡û
>CHL1810050721 MF101452 Rhodophyta Taenioma perpusillum (MF101452) 100993 100918 - Met CAT [ENA] ¡û
>CHL090100278 AF041468 Cryptophyta Guillardia theta 89029 89104 + Met CAT [ENA] ¡û
Identical group No.291695 (23 seq.)
>WENV180367104 OBOE01010643 [OBOE] marine metagenome; ENVO:00002010 718 645 - fMet CAT [ENA] ¢þ
>WENV180590209 OCOS01155434 [OCOS] marine metagenome; Sterile flask 159 86 - fMet CAT [ENA] ¢þ
>WENV181092650 OEBK01021196 [OEBK] marine metagenome; ENVO:00002010 for 'seawater 473 546 + fMet CAT [ENA] ¢þ
>WENV182562803 OJEA01002617 [OJEA] seawater metagenome; Sea water 1956 2029 + fMet CAT [ENA] ¢þ
>WENV182573984 OJFQ01006770 [OJFQ] seawater metagenome; Sea water 152 79 - fMet CAT [ENA] ¢þ
>WENV182589553 OJID01012765 [OJID] seawater metagenome; Sea water 29 102 + fMet CAT [ENA] ¢þ
>WENV170274936 CERM01053236 [CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 276 203 - Met CAT [ENA] ¢þ
>WENV170275285 CERM01077842 [CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 701 628 - Met CAT [ENA] ¢þ
>WENV170439212 CEUV01018216 [CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 104 177 + Met CAT [ENA] ¢þ
>WENV170494157 CEVR01058905 [CEVR] marine metagenome genome assembly TARA_148_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 657 584 - Met CAT [ENA] ¢þ
>WENV170505535 CEVW01073331 [CEVW] marine metagenome genome assembly TARA_149_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 225 152 - Met CAT [ENA] ¢þ
>WENV170532135 CEWO01021350 [CEWO] marine metagenome genome assembly TARA_145_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 881 954 + Met CAT [ENA] ¢þ
>WENV170534053 CEWO01184756 [CEWO] marine metagenome genome assembly TARA_145_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 493 420 - Met CAT [ENA] ¢þ
>WENV170814146 MDSW01212051 [MDSW] marine metagenome; seawater 3088 3161 + Met CAT [ENA] ¢þ
>WENV170815260 MDSX01007093 [MDSX] marine metagenome; seawater 733 660 - Met CAT [ENA] ¢þ
>WENV170818866 MDSX01081024 [MDSX] marine metagenome; seawater 17745 17818 + Met CAT [ENA] ¢þ
>WENV170894877 MDTD01072026 [MDTD] marine metagenome; seawater 6981 7054 + Met CAT [ENA] ¢þ
>CHL1810024547 KU179794 Rhodophyta Gracilariopsis lemaneiformis (KU179794) 84759 84684 - Met CAT [ENA] ¡û
>CHL1810038744 KY018922 Rhodophyta Gracilaria changii (KY018922) 89853 89778 - Met CAT [ENA] ¡û
>CHL1810060923 MH396013 Rhodophyta Gracilaria vermiculophylla (MH396013) 112893 112820 - Met CAT [ENA] ¡û
>CHL090101578 AY673996 Rhodophyta Gracilaria tenuistipitata var. liui 100174 100249 + Met CAT [ENA] ¡û
>CHL090103034 EF508371 Cryptophyta Rhodomonas salina 98282 98355 + Met CAT [ENA] ¡û
>SRA1027366 SRR035086.112855 454 Sequencing (SRP001807) 104 177 + Met CAT [SRA]
Identical group No.297423 (2 seq.)
>CHL1810011906 KJ513670 Rhodophyta Membranoptera weeksiae (KJ513670) 94548 94623 + Met CAT [ENA] ¡û
>CHL1810050469 MF101441 Rhodophyta Spyridia filamentosa (MF101441) 110922 110849 - Met CAT [ENA] ¡û
Identical group No.297514 (5 seq.)
>CHL1810049897 MF101415 Rhodophyta Osmundaria fimbriata (MF101415) 112919 112846 - Met CAT [ENA] ¡û
>CHL1810049992 MF101419 Rhodophyta Bostrychia moritziana (MF101419) 105681 105606 - Met CAT [ENA] ¡û
>CHL1810050244 MF101430 Rhodophyta Bryothamnion seaforthii (MF101430) 111829 111754 - Met CAT [ENA] ¡û
>CHL1810050495 MF101442 Rhodophyta Thuretia quercifolia (MF101442) 108598 108525 - Met CAT [ENA] ¡û
>CHL1810050520 MF101443 Rhodophyta Dasyclonium flaccidum (MF101443) 106444 106370 - Met CAT [ENA] ¡û
Identical group No.297518 (2 seq.)
>CHL1810049920 MF101416 Rhodophyta Caloglossa monosticha (MF101416) 102024 101949 - Met CAT [ENA] ¡û
>CHL1810049967 MF101418 Rhodophyta Caloglossa intermedia (MF101418) 102476 102403 - Met CAT [ENA] ¡û
Identical group No.297522 (6 seq.)
>CHL1810050142 MF101425 Rhodophyta Polysiphonia brodiei (MF101425) 104283 104208 - Met CAT [ENA] ¡û
>CHL1810050192 MF101427 Rhodophyta Polysiphonia elongata (MF101427) 104881 104806 - Met CAT [ENA] ¡û
>CHL1810050294 MF101433 Rhodophyta Vertebrata isogona (MF101433) 104314 104239 - Met CAT [ENA] ¡û
>CHL1810050367 MF101437 Rhodophyta Melanothamnus harveyi (MF101437) 102646 102571 - Met CAT [ENA] ¡û
>CHL1810050393 MF101438 Rhodophyta Polysiphonia scopulorum (MF101438) 104947 104874 - Met CAT [ENA] ¡û
>CHL1810050418 MF101439 Rhodophyta Vertebrata australis (MF101439) 104469 104395 - Met CAT [ENA] ¡û
Identical group No.306709 (3 seq.)
>WENV181406146 OGCG01000007 [OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA 54935 55008 + fMet CAT [ENA] ¢þ
>CHL090100054 AB002583 Rhodophyta Cyanidioschyzon merolae 93031 92958 - Met CAT [ENA] ¡û
>CHL090101436 AY286123 Rhodophyta Cyanidioschyzon merolae strain DBV201 122320 122393 + Met CAT [ENA] ¡û
Identical group No.315653 (5 seq.)
>WENV170022554 BCQK01019987 [BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama 273 346 + Met CAT [ENA] ¢þ
>WENV170023582 BCQL01000091 [BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa 80 7 - Met CAT [ENA] ¢þ
>WENV170023931 BCQL01010321 [BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa 2016 1943 - Met CAT [ENA] ¢þ
>WENV170024745 BCQL01114218 [BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa 516 589 + Met CAT [ENA] ¢þ
>CHL1810058644 MG598531 Rhodophyta Grateloupia filicina (MG598531) 142614 142687 + Met CAT [ENA] ¡û
Identical group No.319063 (2 seq.)
>CHL1810039433 KY083067 Rhodophyta Compsopogon caeruleus (KY083067) 73635 73708 + Met CAT [ENA] ¡û
>CHL1810045141 KY709208 Rhodophyta Boldia erythrosiphon UTEX LB2858 (KY709208) 51516 51589 + Met CAT [ENA] ¡û
Identical group No.323167 (16 seq.)
>WENV170325412 CEST01017548 [CEST] marine metagenome genome assembly TARA_085_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 2342 2269 - Met CAT [ENA] ¢þ
>WENV170919118 MDTF01006155 [MDTF] marine metagenome; seawater 9910 9983 + Met CAT [ENA] ¢þ
>CHL1810008230 KC464603 Rhodophyta Pyropia haitanensis (KC464603) 78121 78048 - Met CAT [ENA] ¡û
>CHL1810049844 MF101411 Rhodophyta Acrosorium ciliolatum (MF101411) 111814 111738 - Met CAT [ENA] ¡û
>CHL1810050067 MF101422 Rhodophyta Caloglossa beccarii (MF101422) 102233 102158 - Met CAT [ENA] ¡û
>CHL1810050091 MF101423 Rhodophyta Polysiphonia sertularioides (MF101423) 103637 103564 - Met CAT [ENA] ¡û
>CHL1810050117 MF101424 Rhodophyta Rhodomela confervoides (MF101424) 110072 109997 - Met CAT [ENA] ¡û
>CHL1810050218 MF101428 Rhodophyta Polysiphonia stricta (MF101428) 105792 105719 - Met CAT [ENA] ¡û
>CHL1810050269 MF101432 Rhodophyta Polysiphonia infestans (MF101432) 102983 102908 - Met CAT [ENA] ¡û
>CHL1810050444 MF101440 Rhodophyta Ophidocladus simpliciusculus (MF101440) 105197 105122 - Met CAT [ENA] ¡û
>CHL1810050595 MF101446 Rhodophyta Gredgaria maugeana (MF101446) 105056 104981 - Met CAT [ENA] ¡û
>CHL1810050671 MF101449 Rhodophyta Kuetzingia canaliculata (MF101449) 111387 111312 - Met CAT [ENA] ¡û
>CHL1810050746 MF101454 Rhodophyta Polysiphonia schneideri (MF101454) 101613 101538 - Met CAT [ENA] ¡û
>CHL1810050798 MF101465 Rhodophyta Digenea simplex (MF101465) 111046 110971 - Met CAT [ENA] ¡û
>CHL090100888 AP006715 Rhodophyta Porphyra yezoensis 78195 78122 - Met CAT [ENA] ¡û
>CHL090103179 U38804 Rhodophyta Porphyra purpurea 77785 77710 - Met CAT [ENA] ¡û
Identical group No.335848 (1 seq.)
>CHL1810006817 KC153978 Rhodophyta Calliarthron tuberculosum (KC153978) 96697 96772 + Met CAT [ENA] ¡û
Identical group No.335916 (1 seq.)
>CHL1810050018 MF101420 Rhodophyta Symphyocladia dendroidea (MF101420) 104975 104900 - Met CAT [ENA] ¡û
Identical group No.347689 (1 seq.)
>CHL1810050697 MF101450 Rhodophyta Cliftonaea pectinata (MF101450) 109606 109533 - Met CAT [ENA] ¡û
Identical group No.359187 (1 seq.)
>CHL1810045169 KY709209 Rhodophyta Bulboplastis apyrenoidosa NIES-2742 (KY709209) 432879 432954 + Met CAT [ENA] ¡û
Identical group No.359199 (1 seq.)
>CHL1810049945 MF101417 Rhodophyta Bostrychia tenella (MF101417) 106699 106626 - Met CAT [ENA] ¡û
Identical group No.370833 (3 seq.)
>CHL1810050167 MF101426 Rhodophyta Vertebrata thuyoides (MF101426) 104365 104290 - Met CAT [ENA] ¡û
>CHL1810050545 MF101444 Rhodophyta Dipterosiphonia australica (MF101444) 104844 104769 - Met CAT [ENA] ¡û
>CHL1810050620 MF101447 Rhodophyta Thaumatella adunca (MF101447) 106161 106086 - Met CAT [ENA] ¡û
Identical group No.388428 (1 seq.)
>CHL1810027996 KU892652 Rhodophyta Kappaphycus alvarezii (KU892652) 93417 93490 + Met CAT [ENA] ¡û
Identical group No.388454 (1 seq.)
>CHL1810049868 MF101413 Rhodophyta Periphykon beckeri (MF101413) 140607 140532 - Met CAT [ENA] ¡û
Identical group No.388455 (1 seq.)
>CHL1810049871 MF101413 Rhodophyta Periphykon beckeri (MF101413) 105556 105483 - Met CAT [ENA] ¡û
Identical group No.393199 (1 seq.)
>CHL090100251 AF022186 Rhodophyta Cyanidium caldarium 156623 156696 + Met CAT [ENA] ¡û
Identical group No.393200 (1 seq.)
>CHL090100254 AF022186 Rhodophyta Cyanidium caldarium 142277 142204 - Met CAT [ENA] ¡û
Identical group No.397565 (2 seq.)
>WENV181233248 OFES01000029 [OFES] coral metagenome; NA 57625 57698 + fMet CAT [ENA] ¢þ
>CHL1810038789 KY033529 Rhodophyta Sheathia arcuata (KY033529) 102950 103023 + Met CAT [ENA] ¡û
Identical group No.397578 (1 seq.)
>CHL1810050823 MF101467 Rhodophyta Tolypiocladia glomerulata (MF101467) 103483 103408 - Met CAT [ENA] ¡û
Identical group No.406301 (1 seq.)
>CHL1810050043 MF101421 Rhodophyta Bostrychia simpliciuscula (MF101421) 103842 103769 - Met CAT [ENA] ¡û
Identical group No.428316 (1 seq.)
>CHL1810000562 AP012987 Rhodophyta Porphyridium purpureum (AP012987) 126118 126045 - Met CAT [ENA] ¡û
Identical group No.428371 (1 seq.)
>CHL1810050570 MF101445 Rhodophyta Sonderella linearis (MF101445) 105885 105812 - Met CAT [ENA] ¡û
Identical group No.438809 (1 seq.)
>CHL1810049793 MF101409 Rhodophyta Platysiphonia delicata (MF101409) 106718 106643 - Met CAT [ENA] ¡û
Identical group No.438813 (1 seq.)
>CHL1810050772 MF101455 Rhodophyta Dictyomenia sonderi (MF101455) 105907 105832 - Met CAT [ENA] ¡û
Identical group No.441250 (1 seq.)
>CHL090200073 AY673996 Rhodophyta Gracilaria tenuistipitata var. liui 64208 64281 + Met CAT [ENA] ¡û
Identical group No.450722 (1 seq.)
>CHL1810010851 KF861575 Rhodophyta Gracilaria salicornia (KF861575) 96410 96485 + Met CAT [ENA] ¡û
Identical group No.490435 (3 seq.)
>WENV181406170 OGCG01000007 [OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA 43796 43724 - Met CAT [ENA] ¢þ
>CHL090100047 AB002583 Rhodophyta Cyanidioschyzon merolae 104198 104270 + Met CAT [ENA] ¡û
>CHL090101445 AY286123 Rhodophyta Cyanidioschyzon merolae strain DBV201 111132 111060 - Met CAT [ENA] ¡û
Identical group No.510135 (2 seq.)
>CHL1830000424 KC464603 Rhodophyta Pyropia haitanensis (KC464603) 118528 118454 - Met CAT [ENA] ¡û
>CHL090200154 U38804 Rhodophyta Porphyra purpurea 116753 116679 - Met CAT [ENA] ¡û
Select
 Sequence ID Genome ID
(or Accession No.)		 Phylum/Class
(Sample source for ENV)		 Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
View ClustalW result

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