This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
Rhodophyta
Anticodon = CCA
HIT:
48 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.393198 (1 seq.)
>CHL090100246
AF022186
Rhodophyta
Cyanidium caldarium
91766
91839
+
Trp
CCA
[ENA]
¡û
Identical group No.480814 (4 seq.)
>CHL1810011918
KJ513670
Rhodophyta
Membranoptera weeksiae (KJ513670)
48449
48375
-
Trp
CCA
[ENA]
¡û
>CHL1810049888
MF101415
Rhodophyta
Osmundaria fimbriata (MF101415)
163678
163750
+
Trp
CCA
[ENA]
¡û
>CHL1810050286
MF101433
Rhodophyta
Vertebrata isogona (MF101433)
149741
149815
+
Trp
CCA
[ENA]
¡û
>CHL1810050486
MF101442
Rhodophyta
Thuretia quercifolia (MF101442)
156124
156198
+
Trp
CCA
[ENA]
¡û
Identical group No.480875 (1 seq.)
>CHL1810049913
MF101416
Rhodophyta
Caloglossa monosticha (MF101416)
147367
147439
+
Trp
CCA
[ENA]
¡û
Identical group No.480880 (4 seq.)
>CHL1810050134
MF101425
Rhodophyta
Polysiphonia brodiei (MF101425)
152078
152152
+
Trp
CCA
[ENA]
¡û
>CHL1810050184
MF101427
Rhodophyta
Polysiphonia elongata (MF101427)
150580
150654
+
Trp
CCA
[ENA]
¡û
>CHL1810050209
MF101428
Rhodophyta
Polysiphonia stricta (MF101428)
151284
151358
+
Trp
CCA
[ENA]
¡û
>CHL1810050384
MF101438
Rhodophyta
Polysiphonia scopulorum (MF101438)
150308
150382
+
Trp
CCA
[ENA]
¡û
Identical group No.490434 (3 seq.)
>WENV181406165
OGCG01000007
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
83069
82997
-
Trp
CCA
[ENA]
¢þ
>CHL090100042
AB002583
Rhodophyta
Cyanidioschyzon merolae
63945
64017
+
Trp
CCA
[ENA]
¡û
>CHL090101456
AY286123
Rhodophyta
Cyanidioschyzon merolae strain DBV201
1701
1629
-
Trp
CCA
[ENA]
¡û
Identical group No.504566 (1 seq.)
>CHL1810045140
KY709208
Rhodophyta
Boldia erythrosiphon UTEX LB2858 (KY709208)
42016
42090
+
Trp
CCA
[ENA]
¡û
Identical group No.504573 (2 seq.)
>CHL1810049761
MF101408
Rhodophyta
Dipterocladia arabiensis (MF101408)
151903
151977
+
Trp
CCA
[ENA]
¡û
>CHL1810050235
MF101430
Rhodophyta
Bryothamnion seaforthii (MF101430)
157544
157618
+
Trp
CCA
[ENA]
¡û
Identical group No.504577 (1 seq.)
>CHL1810050359
MF101437
Rhodophyta
Melanothamnus harveyi (MF101437)
147337
147411
+
Trp
CCA
[ENA]
¡û
Identical group No.510129 (1 seq.)
>CHL090103161
U38804
Rhodophyta
Porphyra purpurea
127672
127747
+
Trp
CCA
[ENA]
¡û
Identical group No.523585 (4 seq.)
>CHL1810006830
KC153978
Rhodophyta
Calliarthron tuberculosum (KC153978)
46753
46679
-
Trp
CCA
[ENA]
¡û
>CHL1810028007
KU892652
Rhodophyta
Kappaphycus alvarezii (KU892652)
47387
47313
-
Trp
CCA
[ENA]
¡û
>CHL1810050083
MF101423
Rhodophyta
Polysiphonia sertularioides (MF101423)
148365
148439
+
Trp
CCA
[ENA]
¡û
>CHL1810050461
MF101441
Rhodophyta
Spyridia filamentosa (MF101441)
156824
156898
+
Trp
CCA
[ENA]
¡û
Identical group No.523622 (1 seq.)
>CHL1810050009
MF101420
Rhodophyta
Symphyocladia dendroidea (MF101420)
154541
154614
+
Trp
CCA
[ENA]
¡û
Identical group No.523626 (1 seq.)
>CHL1810050311
MF101434
Rhodophyta
Herposiphonia versicolor (MF101434)
148989
149061
+
Trp
CCA
[ENA]
¡û
Identical group No.523629 (1 seq.)
>CHL1810050512
MF101443
Rhodophyta
Dasyclonium flaccidum (MF101443)
152213
152287
+
Trp
CCA
[ENA]
¡û
Identical group No.536464 (1 seq.)
>CHL1810050060
MF101422
Rhodophyta
Caloglossa beccarii (MF101422)
147403
147475
+
Trp
CCA
[ENA]
¡û
Identical group No.536470 (3 seq.)
>CHL1810050410
MF101439
Rhodophyta
Vertebrata australis (MF101439)
149671
149745
+
Trp
CCA
[ENA]
¡û
>CHL1810058650
MG598531
Rhodophyta
Grateloupia filicina (MG598531)
90704
90630
-
Trp
CCA
[ENA]
¡û
>CHL1810060917
MH396013
Rhodophyta
Gracilaria vermiculophylla (MH396013)
166918
166844
-
Trp
CCA
[ENA]
¡û
Identical group No.536473 (1 seq.)
>CHL1810050688
MF101450
Rhodophyta
Cliftonaea pectinata (MF101450)
156697
156769
+
Trp
CCA
[ENA]
¡û
Identical group No.549220 (1 seq.)
>CHL1810045173
KY709209
Rhodophyta
Bulboplastis apyrenoidosa NIES-2742 (KY709209)
603442
603370
-
Trp
CCA
[ENA]
¡û
Identical group No.549230 (1 seq.)
>CHL1810049937
MF101417
Rhodophyta
Bostrychia tenella (MF101417)
152756
152830
+
Trp
CCA
[ENA]
¡û
Identical group No.561533 (1 seq.)
>CHL1810050159
MF101426
Rhodophyta
Vertebrata thuyoides (MF101426)
151190
151264
+
Trp
CCA
[ENA]
¡û
Identical group No.561537 (1 seq.)
>CHL1810050435
MF101440
Rhodophyta
Ophidocladus simpliciusculus (MF101440)
150564
150637
+
Trp
CCA
[ENA]
¡û
Identical group No.572136 (1 seq.)
>CHL1810049960
MF101418
Rhodophyta
Caloglossa intermedia (MF101418)
148336
148408
+
Trp
CCA
[ENA]
¡û
Identical group No.572141 (1 seq.)
>CHL1810050612
MF101447
Rhodophyta
Thaumatella adunca (MF101447)
151781
151855
+
Trp
CCA
[ENA]
¡û
Identical group No.572144 (1 seq.)
>CHL1810050738
MF101454
Rhodophyta
Polysiphonia schneideri (MF101454)
145573
145647
+
Trp
CCA
[ENA]
¡û
Identical group No.581982 (1 seq.)
>CHL1810049861
MF101413
Rhodophyta
Periphykon beckeri (MF101413)
150575
150649
+
Trp
CCA
[ENA]
¡û
Identical group No.581985 (1 seq.)
>CHL1810050637
MF101448
Rhodophyta
Lophocladia kuetzingii (MF101448)
157501
157575
+
Trp
CCA
[ENA]
¡û
Identical group No.587054 (1 seq.)
>CHL090100868
AP006715
Rhodophyta
Porphyra yezoensis
129018
129092
+
Trp
CCA
[ENA]
¡û
Identical group No.592261 (1 seq.)
>CHL1810038738
KY018922
Rhodophyta
Gracilaria changii (KY018922)
143535
143461
-
Trp
CCA
[ENA]
¡û
Identical group No.592266 (1 seq.)
>CHL1810038802
KY033529
Rhodophyta
Sheathia arcuata (KY033529)
52427
52355
-
Trp
CCA
[ENA]
¡û
Identical group No.592273 (1 seq.)
>CHL1810049810
MF101410
Rhodophyta
Laurenciella marilzae (MF101410)
153802
153876
+
Trp
CCA
[ENA]
¡û
Identical group No.592276 (1 seq.)
>CHL1810050789
MF101465
Rhodophyta
Digenea simplex (MF101465)
156956
157030
+
Trp
CCA
[ENA]
¡û
Identical group No.592279 (1 seq.)
>CHL1810050815
MF101467
Rhodophyta
Tolypiocladia glomerulata (MF101467)
148173
148245
+
Trp
CCA
[ENA]
¡û
Identical group No.601884 (1 seq.)
>CHL1810049836
MF101411
Rhodophyta
Acrosorium ciliolatum (MF101411)
157863
157937
+
Trp
CCA
[ENA]
¡û
Identical group No.601889 (1 seq.)
>CHL1810050035
MF101421
Rhodophyta
Bostrychia simpliciuscula (MF101421)
149584
149658
+
Trp
CCA
[ENA]
¡û
Identical group No.601894 (1 seq.)
>CHL1810050537
MF101444
Rhodophyta
Dipterosiphonia australica (MF101444)
150550
150624
+
Trp
CCA
[ENA]
¡û
Identical group No.611247 (1 seq.)
>CHL1810008210
KC464603
Rhodophyta
Pyropia haitanensis (KC464603)
130105
130178
+
Trp
CCA
[ENA]
¡û
Identical group No.611307 (1 seq.)
>CHL1810024541
KU179794
Rhodophyta
Gracilariopsis lemaneiformis (KU179794)
139030
138956
-
Trp
CCA
[ENA]
¡û
Identical group No.611322 (2 seq.)
>CHL1810049984
MF101419
Rhodophyta
Bostrychia moritziana (MF101419)
151491
151564
+
Trp
CCA
[ENA]
¡û
>CHL1810050335
MF101436
Rhodophyta
Dasya naccarioides (MF101436)
152801
152875
+
Trp
CCA
[ENA]
¡û
Identical group No.619483 (1 seq.)
>CHL1810050261
MF101432
Rhodophyta
Polysiphonia infestans (MF101432)
147736
147810
+
Trp
CCA
[ENA]
¡û
Identical group No.619486 (2 seq.)
>CHL1810050663
MF101449
Rhodophyta
Kuetzingia canaliculata (MF101449)
159633
159706
+
Trp
CCA
[ENA]
¡û
>CHL1810050713
MF101452
Rhodophyta
Taenioma perpusillum (MF101452)
146084
146158
+
Trp
CCA
[ENA]
¡û
Identical group No.627277 (1 seq.)
>CHL1810000558
AP012987
Rhodophyta
Porphyridium purpureum (AP012987)
160459
160387
-
Trp
CCA
[ENA]
¡û
Identical group No.627324 (1 seq.)
>CHL1810050562
MF101445
Rhodophyta
Sonderella linearis (MF101445)
151875
151947
+
Trp
CCA
[ENA]
¡û
Identical group No.639049 (1 seq.)
>CHL1810049786
MF101409
Rhodophyta
Platysiphonia delicata (MF101409)
153225
153299
+
Trp
CCA
[ENA]
¡û
Identical group No.639052 (1 seq.)
>CHL1810050587
MF101446
Rhodophyta
Gredgaria maugeana (MF101446)
150275
150349
+
Trp
CCA
[ENA]
¡û
Identical group No.639055 (1 seq.)
>CHL1810050763
MF101455
Rhodophyta
Dictyomenia sonderi (MF101455)
151097
151171
+
Trp
CCA
[ENA]
¡û
Identical group No.641644 (1 seq.)
>CHL090101572
AY673996
Rhodophyta
Gracilaria tenuistipitata var. liui
46189
46263
+
Trp
CCA
[ENA]
¡û
Identical group No.652663 (1 seq.)
>CHL1810010845
KF861575
Rhodophyta
Gracilaria salicornia (KF861575)
42478
42552
+
Trp
CCA
[ENA]
¡û
Identical group No.652693 (1 seq.)
>CHL1810050108
MF101424
Rhodophyta
Rhodomela confervoides (MF101424)
157575
157649
+
Trp
CCA
[ENA]
¡û
Identical group No.750896 (1 seq.)
>CHL1810039432
KY083067
Rhodophyta
Compsopogon caeruleus (KY083067)
64282
64355
+
Trp
CCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK