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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Rhodophyta
Anticodon = CCG
HIT:
54 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.347683 (1 seq.)
>CHL1810050055
MF101422
Rhodophyta
Caloglossa beccarii (MF101422)
52034
52109
+
Arg
CCG
[ENA]
¡û
Identical group No.428314 (1 seq.)
>CHL1810000550
AP012987
Rhodophyta
Porphyridium purpureum (AP012987)
108222
108297
+
Arg
CCG
[ENA]
¡û
Identical group No.480812 (1 seq.)
>CHL1810011913
KJ513670
Rhodophyta
Membranoptera weeksiae (KJ513670)
148763
148691
-
Arg
CCG
[ENA]
¡û
Identical group No.480869 (1 seq.)
>CHL1810049883
MF101415
Rhodophyta
Osmundaria fimbriata (MF101415)
56962
57036
+
Arg
CCG
[ENA]
¡û
Identical group No.480878 (2 seq.)
>CHL1810050129
MF101425
Rhodophyta
Polysiphonia brodiei (MF101425)
53125
53197
+
Arg
CCG
[ENA]
¡û
>CHL1810050154
MF101426
Rhodophyta
Vertebrata thuyoides (MF101426)
53441
53515
+
Arg
CCG
[ENA]
¡û
Identical group No.504571 (1 seq.)
>CHL1810045162
KY709208
Rhodophyta
Boldia erythrosiphon UTEX LB2858 (KY709208)
14073
14001
-
Arg
CCG
[ENA]
¡û
Identical group No.504572 (1 seq.)
>CHL1810050230
MF101430
Rhodophyta
Bryothamnion seaforthii (MF101430)
59906
59980
+
Arg
CCG
[ENA]
¡û
Identical group No.504576 (1 seq.)
>CHL1810050354
MF101437
Rhodophyta
Melanothamnus harveyi (MF101437)
52010
52083
+
Arg
CCG
[ENA]
¡û
Identical group No.510127 (1 seq.)
>CHL090103156
U38804
Rhodophyta
Porphyra purpurea
23388
23460
+
Arg
CCG
[ENA]
¡û
Identical group No.523583 (1 seq.)
>CHL1810006824
KC153978
Rhodophyta
Calliarthron tuberculosum (KC153978)
149700
149628
-
Arg
CCG
[ENA]
¡û
Identical group No.523621 (1 seq.)
>CHL1810050004
MF101420
Rhodophyta
Symphyocladia dendroidea (MF101420)
53897
53971
+
Arg
CCG
[ENA]
¡û
Identical group No.523624 (1 seq.)
>CHL1810050306
MF101434
Rhodophyta
Herposiphonia versicolor (MF101434)
53544
53616
+
Arg
CCG
[ENA]
¡û
Identical group No.523628 (1 seq.)
>CHL1810050507
MF101443
Rhodophyta
Dasyclonium flaccidum (MF101443)
55059
55131
+
Arg
CCG
[ENA]
¡û
Identical group No.536467 (1 seq.)
>CHL1810050079
MF101423
Rhodophyta
Polysiphonia sertularioides (MF101423)
53175
53247
+
Arg
CCG
[ENA]
¡û
Identical group No.536469 (1 seq.)
>CHL1810050405
MF101439
Rhodophyta
Vertebrata australis (MF101439)
53496
53568
+
Arg
CCG
[ENA]
¡û
Identical group No.536472 (1 seq.)
>CHL1810050683
MF101450
Rhodophyta
Cliftonaea pectinata (MF101450)
57682
57754
+
Arg
CCG
[ENA]
¡û
Identical group No.536482 (1 seq.)
>CHL1810058655
MG598531
Rhodophyta
Grateloupia filicina (MG598531)
8311
8236
-
Arg
CCG
[ENA]
¡û
Identical group No.549221 (1 seq.)
>CHL1810045182
KY709209
Rhodophyta
Bulboplastis apyrenoidosa NIES-2742 (KY709209)
182715
182642
-
Arg
CCG
[ENA]
¡û
Identical group No.549228 (1 seq.)
>CHL1810049932
MF101417
Rhodophyta
Bostrychia tenella (MF101417)
55011
55083
+
Arg
CCG
[ENA]
¡û
Identical group No.561535 (1 seq.)
>CHL1810050430
MF101440
Rhodophyta
Ophidocladus simpliciusculus (MF101440)
54018
54090
+
Arg
CCG
[ENA]
¡û
Identical group No.561541 (1 seq.)
>CHL1810050481
MF101442
Rhodophyta
Thuretia quercifolia (MF101442)
56648
56722
+
Arg
CCG
[ENA]
¡û
Identical group No.572138 (1 seq.)
>CHL1810050281
MF101433
Rhodophyta
Vertebrata isogona (MF101433)
53450
53524
+
Arg
CCG
[ENA]
¡û
Identical group No.572140 (1 seq.)
>CHL1810050607
MF101447
Rhodophyta
Thaumatella adunca (MF101447)
54532
54604
+
Arg
CCG
[ENA]
¡û
Identical group No.572143 (2 seq.)
>CHL1810050179
MF101427
Rhodophyta
Polysiphonia elongata (MF101427)
53518
53590
+
Arg
CCG
[ENA]
¡û
>CHL1810050733
MF101454
Rhodophyta
Polysiphonia schneideri (MF101454)
51105
51177
+
Arg
CCG
[ENA]
¡û
Identical group No.581977 (1 seq.)
>CHL1810049756
MF101408
Rhodophyta
Dipterocladia arabiensis (MF101408)
54723
54795
+
Arg
CCG
[ENA]
¡û
Identical group No.581981 (1 seq.)
>CHL1810049856
MF101413
Rhodophyta
Periphykon beckeri (MF101413)
54463
54537
+
Arg
CCG
[ENA]
¡û
Identical group No.581984 (1 seq.)
>CHL1810050632
MF101448
Rhodophyta
Lophocladia kuetzingii (MF101448)
54303
54375
+
Arg
CCG
[ENA]
¡û
Identical group No.587050 (1 seq.)
>CHL090100250
AF022186
Rhodophyta
Cyanidium caldarium
124113
124187
+
Arg
CCG
[ENA]
¡û
Identical group No.587053 (1 seq.)
>CHL090100862
AP006715
Rhodophyta
Porphyra yezoensis
23394
23466
+
Arg
CCG
[ENA]
¡û
Identical group No.592259 (1 seq.)
>CHL1810038725
KY018922
Rhodophyta
Gracilaria changii (KY018922)
35723
35795
+
Arg
CCG
[ENA]
¡û
Identical group No.592265 (1 seq.)
>CHL1810038796
KY033529
Rhodophyta
Sheathia arcuata (KY033529)
158040
157966
-
Arg
CCG
[ENA]
¡û
Identical group No.592271 (3 seq.)
>CHL1810049805
MF101410
Rhodophyta
Laurenciella marilzae (MF101410)
55410
55482
+
Arg
CCG
[ENA]
¡û
>CHL1810050582
MF101446
Rhodophyta
Gredgaria maugeana (MF101446)
53900
53972
+
Arg
CCG
[ENA]
¡û
>CHL1810050758
MF101455
Rhodophyta
Dictyomenia sonderi (MF101455)
53866
53938
+
Arg
CCG
[ENA]
¡û
Identical group No.592274 (1 seq.)
>CHL1810050204
MF101428
Rhodophyta
Polysiphonia stricta (MF101428)
54344
54416
+
Arg
CCG
[ENA]
¡û
Identical group No.592275 (1 seq.)
>CHL1810050784
MF101465
Rhodophyta
Digenea simplex (MF101465)
56015
56089
+
Arg
CCG
[ENA]
¡û
Identical group No.592278 (1 seq.)
>CHL1810050810
MF101467
Rhodophyta
Tolypiocladia glomerulata (MF101467)
52893
52965
+
Arg
CCG
[ENA]
¡û
Identical group No.592288 (1 seq.)
>CHL1810060908
MH396013
Rhodophyta
Gracilaria vermiculophylla (MH396013)
58256
58328
+
Arg
CCG
[ENA]
¡û
Identical group No.601883 (1 seq.)
>CHL1810049831
MF101411
Rhodophyta
Acrosorium ciliolatum (MF101411)
57362
57436
+
Arg
CCG
[ENA]
¡û
Identical group No.601887 (1 seq.)
>CHL1810050030
MF101421
Rhodophyta
Bostrychia simpliciuscula (MF101421)
52568
52640
+
Arg
CCG
[ENA]
¡û
Identical group No.601893 (1 seq.)
>CHL1810050532
MF101444
Rhodophyta
Dipterosiphonia australica (MF101444)
53767
53841
+
Arg
CCG
[ENA]
¡û
Identical group No.611246 (1 seq.)
>CHL1810008204
KC464603
Rhodophyta
Pyropia haitanensis (KC464603)
23303
23375
+
Arg
CCG
[ENA]
¡û
Identical group No.611304 (1 seq.)
>CHL1810024527
KU179794
Rhodophyta
Gracilariopsis lemaneiformis (KU179794)
29676
29748
+
Arg
CCG
[ENA]
¡û
Identical group No.611314 (1 seq.)
>CHL1810039451
KY083067
Rhodophyta
Compsopogon caeruleus (KY083067)
36902
36830
-
Arg
CCG
[ENA]
¡û
Identical group No.611321 (1 seq.)
>CHL1810050330
MF101436
Rhodophyta
Dasya naccarioides (MF101436)
53927
54001
+
Arg
CCG
[ENA]
¡û
Identical group No.619481 (1 seq.)
>CHL1810050256
MF101432
Rhodophyta
Polysiphonia infestans (MF101432)
52559
52631
+
Arg
CCG
[ENA]
¡û
Identical group No.619485 (1 seq.)
>CHL1810050658
MF101449
Rhodophyta
Kuetzingia canaliculata (MF101449)
57429
57501
+
Arg
CCG
[ENA]
¡û
Identical group No.627322 (1 seq.)
>CHL1810050557
MF101445
Rhodophyta
Sonderella linearis (MF101445)
54441
54515
+
Arg
CCG
[ENA]
¡û
Identical group No.639048 (1 seq.)
>CHL1810049781
MF101409
Rhodophyta
Platysiphonia delicata (MF101409)
54651
54725
+
Arg
CCG
[ENA]
¡û
Identical group No.641646 (1 seq.)
>CHL090101585
AY673996
Rhodophyta
Gracilaria tenuistipitata var. liui
154769
154697
-
Arg
CCG
[ENA]
¡û
Identical group No.646350 (1 seq.)
>CHL1810049979
MF101419
Rhodophyta
Bostrychia moritziana (MF101419)
54331
54403
+
Arg
CCG
[ENA]
¡û
Identical group No.652665 (1 seq.)
>CHL1810010858
KF861575
Rhodophyta
Gracilaria salicornia (KF861575)
150987
150915
-
Arg
CCG
[ENA]
¡û
Identical group No.652691 (1 seq.)
>CHL1810050103
MF101424
Rhodophyta
Rhodomela confervoides (MF101424)
54770
54842
+
Arg
CCG
[ENA]
¡û
Identical group No.652695 (1 seq.)
>CHL1810050379
MF101438
Rhodophyta
Polysiphonia scopulorum (MF101438)
53882
53954
+
Arg
CCG
[ENA]
¡û
Identical group No.652698 (1 seq.)
>CHL1810050456
MF101441
Rhodophyta
Spyridia filamentosa (MF101441)
57574
57646
+
Arg
CCG
[ENA]
¡û
Identical group No.732074 (1 seq.)
>CHL1830001338
KU892652
Rhodophyta
Kappaphycus alvarezii (KU892652)
148399
148328
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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