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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Rhodophyta
Anticodon = GAC
HIT:
39 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.250399 (2 seq.)
>CHL1810050014
MF101420
Rhodophyta
Symphyocladia dendroidea (MF101420)
145289
145212
-
Val
GAC
[ENA]
¡û
>CHL1810050768
MF101455
Rhodophyta
Dictyomenia sonderi (MF101455)
144400
144325
-
Val
GAC
[ENA]
¡û
Identical group No.250400 (1 seq.)
>CHL1810050315
MF101434
Rhodophyta
Herposiphonia versicolor (MF101434)
142315
142241
-
Val
GAC
[ENA]
¡û
Identical group No.259248 (1 seq.)
>CHL1810049866
MF101413
Rhodophyta
Periphykon beckeri (MF101413)
143848
143773
-
Val
GAC
[ENA]
¡û
Identical group No.260803 (1 seq.)
>CHL1810050214
MF101428
Rhodophyta
Polysiphonia stricta (MF101428)
144481
144407
-
Val
GAC
[ENA]
¡û
Identical group No.268266 (1 seq.)
>CHL1810050591
MF101446
Rhodophyta
Gredgaria maugeana (MF101446)
143533
143459
-
Val
GAC
[ENA]
¡û
Identical group No.297421 (1 seq.)
>CHL1810011902
KJ513670
Rhodophyta
Membranoptera weeksiae (KJ513670)
55418
55491
+
Val
GAC
[ENA]
¡û
Identical group No.297512 (1 seq.)
>CHL1810049893
MF101415
Rhodophyta
Osmundaria fimbriata (MF101415)
156817
156744
-
Val
GAC
[ENA]
¡û
Identical group No.306707 (3 seq.)
>WENV181406166
OGCG01000007
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
77788
77715
-
Val
GAC
[ENA]
¢þ
>CHL090100043
AB002583
Rhodophyta
Cyanidioschyzon merolae
70146
70219
+
Val
GAC
[ENA]
¡û
>CHL090101441
AY286123
Rhodophyta
Cyanidioschyzon merolae strain DBV201
145205
145132
-
Val
GAC
[ENA]
¡û
Identical group No.319077 (1 seq.)
>CHL1810050240
MF101430
Rhodophyta
Bryothamnion seaforthii (MF101430)
150858
150785
-
Val
GAC
[ENA]
¡û
Identical group No.323942 (2 seq.)
>CHL1830000423
KC464603
Rhodophyta
Pyropia haitanensis (KC464603)
122467
122391
-
Val
GAC
[ENA]
¡û
>CHL090200153
U38804
Rhodophyta
Porphyra purpurea
120320
120245
-
Val
GAC
[ENA]
¡û
Identical group No.335846 (1 seq.)
>CHL1810006812
KC153978
Rhodophyta
Calliarthron tuberculosum (KC153978)
53758
53833
+
Val
GAC
[ENA]
¡û
Identical group No.335934 (1 seq.)
>CHL1830002214
MF101443
Rhodophyta
Dasyclonium flaccidum (MF101443)
145468
145393
-
Val
GAC
[ENA]
¡û
Identical group No.347688 (1 seq.)
>CHL1810050693
MF101450
Rhodophyta
Cliftonaea pectinata (MF101450)
149771
149696
-
Val
GAC
[ENA]
¡û
Identical group No.347702 (1 seq.)
>CHL1810058639
MG598531
Rhodophyta
Grateloupia filicina (MG598531)
98475
98550
+
Val
GAC
[ENA]
¡û
Identical group No.359198 (1 seq.)
>CHL1810049941
MF101417
Rhodophyta
Bostrychia tenella (MF101417)
146018
145945
-
Val
GAC
[ENA]
¡û
Identical group No.370836 (1 seq.)
>CHL1810050440
MF101440
Rhodophyta
Ophidocladus simpliciusculus (MF101440)
143825
143752
-
Val
GAC
[ENA]
¡û
Identical group No.370838 (1 seq.)
>CHL1810050491
MF101442
Rhodophyta
Thuretia quercifolia (MF101442)
149117
149044
-
Val
GAC
[ENA]
¡û
Identical group No.379963 (1 seq.)
>CHL1810050616
MF101447
Rhodophyta
Thaumatella adunca (MF101447)
145021
144948
-
Val
GAC
[ENA]
¡û
Identical group No.388426 (1 seq.)
>CHL1810027991
KU892652
Rhodophyta
Kappaphycus alvarezii (KU892652)
54277
54352
+
Val
GAC
[ENA]
¡û
Identical group No.388452 (1 seq.)
>CHL1810049765
MF101408
Rhodophyta
Dipterocladia arabiensis (MF101408)
144319
144246
-
Val
GAC
[ENA]
¡û
Identical group No.388457 (1 seq.)
>CHL1810050642
MF101448
Rhodophyta
Lophocladia kuetzingii (MF101448)
150661
150588
-
Val
GAC
[ENA]
¡û
Identical group No.393117 (1 seq.)
>CHL090200043
AP006715
Rhodophyta
Porphyra yezoensis
121551
121476
-
Val
GAC
[ENA]
¡û
Identical group No.393204 (1 seq.)
>CHL090100263
AF022186
Rhodophyta
Cyanidium caldarium
85330
85257
-
Val
GAC
[ENA]
¡û
Identical group No.397561 (1 seq.)
>CHL1810038739
KY018922
Rhodophyta
Gracilaria changii (KY018922)
129097
129024
-
Val
GAC
[ENA]
¡û
Identical group No.397564 (1 seq.)
>CHL1810038784
KY033529
Rhodophyta
Sheathia arcuata (KY033529)
59918
59993
+
Val
GAC
[ENA]
¡û
Identical group No.397575 (1 seq.)
>CHL1810049815
MF101410
Rhodophyta
Laurenciella marilzae (MF101410)
147031
146957
-
Val
GAC
[ENA]
¡û
Identical group No.397577 (1 seq.)
>CHL1810050794
MF101465
Rhodophyta
Digenea simplex (MF101465)
150048
149975
-
Val
GAC
[ENA]
¡û
Identical group No.397588 (1 seq.)
>CHL1810060918
MH396013
Rhodophyta
Gracilaria vermiculophylla (MH396013)
152387
152314
-
Val
GAC
[ENA]
¡û
Identical group No.406299 (1 seq.)
>CHL1810050039
MF101421
Rhodophyta
Bostrychia simpliciuscula (MF101421)
142814
142741
-
Val
GAC
[ENA]
¡û
Identical group No.406313 (1 seq.)
>CHL1830002150
MF101411
Rhodophyta
Acrosorium ciliolatum (MF101411)
150930
150857
-
Val
GAC
[ENA]
¡û
Identical group No.414374 (1 seq.)
>CHL1810024542
KU179794
Rhodophyta
Gracilariopsis lemaneiformis (KU179794)
124289
124216
-
Val
GAC
[ENA]
¡û
Identical group No.414390 (1 seq.)
>CHL1810050339
MF101436
Rhodophyta
Dasya naccarioides (MF101436)
145487
145412
-
Val
GAC
[ENA]
¡û
Identical group No.421767 (1 seq.)
>CHL1830002230
MF101449
Rhodophyta
Kuetzingia canaliculata (MF101449)
151858
151785
-
Val
GAC
[ENA]
¡û
Identical group No.428370 (1 seq.)
>CHL1810050566
MF101445
Rhodophyta
Sonderella linearis (MF101445)
145159
145086
-
Val
GAC
[ENA]
¡û
Identical group No.441246 (1 seq.)
>CHL090101573
AY673996
Rhodophyta
Gracilaria tenuistipitata var. liui
60743
60816
+
Val
GAC
[ENA]
¡û
Identical group No.445241 (1 seq.)
>CHL1810049988
MF101419
Rhodophyta
Bostrychia moritziana (MF101419)
144668
144595
-
Val
GAC
[ENA]
¡û
Identical group No.450721 (1 seq.)
>CHL1810010846
KF861575
Rhodophyta
Gracilaria salicornia (KF861575)
57025
57098
+
Val
GAC
[ENA]
¡û
Identical group No.450767 (1 seq.)
>CHL1810050113
MF101424
Rhodophyta
Rhodomela confervoides (MF101424)
149888
149815
-
Val
GAC
[ENA]
¡û
Identical group No.450768 (1 seq.)
>CHL1810050389
MF101438
Rhodophyta
Polysiphonia scopulorum (MF101438)
143588
143515
-
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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