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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Rhodophyta
Anticodon = GCA
HIT:
49 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.695940 (1 seq.)
>CHL1810006819
KC153978
Rhodophyta
Calliarthron tuberculosum (KC153978)
145531
145602
+
Cys
GCA
[ENA]
¡û
Identical group No.703870 (1 seq.)
>CHL1810050699
MF101450
Rhodophyta
Cliftonaea pectinata (MF101450)
62151
62080
-
Cys
GCA
[ENA]
¡û
Identical group No.711732 (1 seq.)
>CHL1810045180
KY709209
Rhodophyta
Bulboplastis apyrenoidosa NIES-2742 (KY709209)
389919
389848
-
Cys
GCA
[ENA]
¡û
Identical group No.735158 (1 seq.)
>CHL090100863
AP006715
Rhodophyta
Porphyra yezoensis
32668
32739
+
Cys
GCA
[ENA]
¡û
Identical group No.738484 (1 seq.)
>CHL1810038791
KY033529
Rhodophyta
Sheathia arcuata (KY033529)
153578
153651
+
Cys
GCA
[ENA]
¡û
Identical group No.750828 (1 seq.)
>CHL1810008205
KC464603
Rhodophyta
Pyropia haitanensis (KC464603)
32603
32674
+
Cys
GCA
[ENA]
¡û
Identical group No.750899 (1 seq.)
>CHL1810039446
KY083067
Rhodophyta
Compsopogon caeruleus (KY083067)
73925
73852
-
Cys
GCA
[ENA]
¡û
Identical group No.760739 (1 seq.)
>CHL1810000559
AP012987
Rhodophyta
Porphyridium purpureum (AP012987)
159712
159639
-
Cys
GCA
[ENA]
¡û
Identical group No.770463 (1 seq.)
>CHL1810049795
MF101409
Rhodophyta
Platysiphonia delicata (MF101409)
59163
59090
-
Cys
GCA
[ENA]
¡û
Identical group No.786895 (1 seq.)
>CHL1810011908
KJ513670
Rhodophyta
Membranoptera weeksiae (KJ513670)
144299
144369
+
Cys
GCA
[ENA]
¡û
Identical group No.786944 (8 seq.)
>CHL1810049899
MF101415
Rhodophyta
Osmundaria fimbriata (MF101415)
63947
63875
-
Cys
GCA
[ENA]
¡û
>CHL1810050020
MF101420
Rhodophyta
Symphyocladia dendroidea (MF101420)
58362
58290
-
Cys
GCA
[ENA]
¡û
>CHL1810050321
MF101434
Rhodophyta
Herposiphonia versicolor (MF101434)
58049
57977
-
Cys
GCA
[ENA]
¡û
>CHL1810050572
MF101445
Rhodophyta
Sonderella linearis (MF101445)
59182
59110
-
Cys
GCA
[ENA]
¡û
>CHL1810050597
MF101446
Rhodophyta
Gredgaria maugeana (MF101446)
58387
58315
-
Cys
GCA
[ENA]
¡û
>CHL1810050622
MF101447
Rhodophyta
Thaumatella adunca (MF101447)
59143
59071
-
Cys
GCA
[ENA]
¡û
>CHL1810050648
MF101448
Rhodophyta
Lophocladia kuetzingii (MF101448)
58683
58612
-
Cys
GCA
[ENA]
¡û
>CHL1810050673
MF101449
Rhodophyta
Kuetzingia canaliculata (MF101449)
62320
62247
-
Cys
GCA
[ENA]
¡û
Identical group No.786946 (1 seq.)
>CHL1810049922
MF101416
Rhodophyta
Caloglossa monosticha (MF101416)
55448
55377
-
Cys
GCA
[ENA]
¡û
Identical group No.786947 (1 seq.)
>CHL1810050144
MF101425
Rhodophyta
Polysiphonia brodiei (MF101425)
57587
57517
-
Cys
GCA
[ENA]
¡û
Identical group No.789684 (3 seq.)
>WENV181406156
OGCG01000007
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
136702
136632
-
Cys
GCA
[ENA]
¢þ
>CHL090100033
AB002583
Rhodophyta
Cyanidioschyzon merolae
10381
10451
+
Cys
GCA
[ENA]
¡û
>CHL090101447
AY286123
Rhodophyta
Cyanidioschyzon merolae strain DBV201
54998
54928
-
Cys
GCA
[ENA]
¡û
Identical group No.793292 (1 seq.)
>CHL1810045157
KY709208
Rhodophyta
Boldia erythrosiphon UTEX LB2858 (KY709208)
51826
51754
-
Cys
GCA
[ENA]
¡û
Identical group No.793296 (1 seq.)
>CHL1810050246
MF101430
Rhodophyta
Bryothamnion seaforthii (MF101430)
64316
64244
-
Cys
GCA
[ENA]
¡û
Identical group No.793297 (1 seq.)
>CHL1810050369
MF101437
Rhodophyta
Melanothamnus harveyi (MF101437)
56494
56422
-
Cys
GCA
[ENA]
¡û
Identical group No.793835 (4 seq.)
>WENV170359647
CETL01013568
[CETL] marine metagenome genome assembly TARA_112_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
202
132
-
Cys
GCA
[ENA]
¢þ
>WENV170896136
MDTD01090740
[MDTD] marine metagenome; seawater
821
751
-
Cys
GCA
[ENA]
¢þ
>CHL1810050825
MF101467
Rhodophyta
Tolypiocladia glomerulata (MF101467)
57230
57160
-
Cys
GCA
[ENA]
¡û
>W1810521835
QCIJ01000006
Cyanobacteriota
Prochlorococcus sp. AG-402-K22 [QCIJ]
29574
29504
-
Cys
GCA
[ENA]
¡û
Identical group No.798569 (2 seq.)
>CHL1810050119
MF101424
Rhodophyta
Rhodomela confervoides (MF101424)
59450
59380
-
Cys
GCA
[ENA]
¡û
>CHL1810050522
MF101443
Rhodophyta
Dasyclonium flaccidum (MF101443)
59710
59638
-
Cys
GCA
[ENA]
¡û
Identical group No.802092 (1 seq.)
>CHL1810050069
MF101422
Rhodophyta
Caloglossa beccarii (MF101422)
56028
55956
-
Cys
GCA
[ENA]
¡û
Identical group No.802093 (3 seq.)
>CHL1810050093
MF101423
Rhodophyta
Polysiphonia sertularioides (MF101423)
57501
57429
-
Cys
GCA
[ENA]
¡û
>CHL1810050194
MF101427
Rhodophyta
Polysiphonia elongata (MF101427)
57926
57856
-
Cys
GCA
[ENA]
¡û
>CHL1810050748
MF101454
Rhodophyta
Polysiphonia schneideri (MF101454)
55474
55401
-
Cys
GCA
[ENA]
¡û
Identical group No.802094 (2 seq.)
>CHL1810049821
MF101410
Rhodophyta
Laurenciella marilzae (MF101410)
59961
59889
-
Cys
GCA
[ENA]
¡û
>CHL1810050420
MF101439
Rhodophyta
Vertebrata australis (MF101439)
58035
57963
-
Cys
GCA
[ENA]
¡û
Identical group No.802100 (1 seq.)
>CHL1810058629
MG598531
Rhodophyta
Grateloupia filicina (MG598531)
3111
3183
+
Cys
GCA
[ENA]
¡û
Identical group No.805635 (1 seq.)
>CHL1810049947
MF101417
Rhodophyta
Bostrychia tenella (MF101417)
59539
59467
-
Cys
GCA
[ENA]
¡û
Identical group No.808996 (1 seq.)
>CHL1810050169
MF101426
Rhodophyta
Vertebrata thuyoides (MF101426)
57939
57866
-
Cys
GCA
[ENA]
¡û
Identical group No.808997 (1 seq.)
>CHL1810050446
MF101440
Rhodophyta
Ophidocladus simpliciusculus (MF101440)
58494
58422
-
Cys
GCA
[ENA]
¡û
Identical group No.808999 (1 seq.)
>CHL1810050497
MF101442
Rhodophyta
Thuretia quercifolia (MF101442)
61368
61296
-
Cys
GCA
[ENA]
¡û
Identical group No.812213 (1 seq.)
>CHL1810049969
MF101418
Rhodophyta
Caloglossa intermedia (MF101418)
55652
55580
-
Cys
GCA
[ENA]
¡û
Identical group No.812214 (1 seq.)
>CHL1810050296
MF101433
Rhodophyta
Vertebrata isogona (MF101433)
57952
57880
-
Cys
GCA
[ENA]
¡û
Identical group No.815033 (1 seq.)
>CHL1810027998
KU892652
Rhodophyta
Kappaphycus alvarezii (KU892652)
143452
143524
+
Cys
GCA
[ENA]
¡û
Identical group No.815041 (1 seq.)
>CHL1810049771
MF101408
Rhodophyta
Dipterocladia arabiensis (MF101408)
59138
59066
-
Cys
GCA
[ENA]
¡û
Identical group No.815043 (1 seq.)
>CHL1810049873
MF101413
Rhodophyta
Periphykon beckeri (MF101413)
58935
58862
-
Cys
GCA
[ENA]
¡û
Identical group No.816423 (1 seq.)
>CHL090100247
AF022186
Rhodophyta
Cyanidium caldarium
106129
106199
+
Cys
GCA
[ENA]
¡û
Identical group No.818073 (1 seq.)
>CHL1810038746
KY018922
Rhodophyta
Gracilaria changii (KY018922)
40252
40182
-
Cys
GCA
[ENA]
¡û
Identical group No.818078 (1 seq.)
>CHL1810050220
MF101428
Rhodophyta
Polysiphonia stricta (MF101428)
58946
58874
-
Cys
GCA
[ENA]
¡û
Identical group No.818079 (2 seq.)
>CHL1810024549
KU179794
Rhodophyta
Gracilariopsis lemaneiformis (KU179794)
34324
34252
-
Cys
GCA
[ENA]
¡û
>CHL1810050800
MF101465
Rhodophyta
Digenea simplex (MF101465)
60501
60431
-
Cys
GCA
[ENA]
¡û
Identical group No.818084 (1 seq.)
>CHL1810060925
MH396013
Rhodophyta
Gracilaria vermiculophylla (MH396013)
62892
62820
-
Cys
GCA
[ENA]
¡û
Identical group No.820598 (1 seq.)
>CHL1810049846
MF101411
Rhodophyta
Acrosorium ciliolatum (MF101411)
61873
61801
-
Cys
GCA
[ENA]
¡û
Identical group No.820600 (1 seq.)
>CHL1810050045
MF101421
Rhodophyta
Bostrychia simpliciuscula (MF101421)
57118
57046
-
Cys
GCA
[ENA]
¡û
Identical group No.820601 (1 seq.)
>CHL1810050547
MF101444
Rhodophyta
Dipterosiphonia australica (MF101444)
58295
58223
-
Cys
GCA
[ENA]
¡û
Identical group No.823714 (1 seq.)
>CHL1810050344
MF101436
Rhodophyta
Dasya naccarioides (MF101436)
58451
58379
-
Cys
GCA
[ENA]
¡û
Identical group No.825965 (1 seq.)
>CHL1810050271
MF101432
Rhodophyta
Polysiphonia infestans (MF101432)
56909
56839
-
Cys
GCA
[ENA]
¡û
Identical group No.833189 (1 seq.)
>CHL1810050774
MF101455
Rhodophyta
Dictyomenia sonderi (MF101455)
58339
58267
-
Cys
GCA
[ENA]
¡û
Identical group No.833993 (1 seq.)
>CHL090101580
AY673996
Rhodophyta
Gracilaria tenuistipitata var. liui
150284
150354
+
Cys
GCA
[ENA]
¡û
Identical group No.835241 (1 seq.)
>CHL1810049994
MF101419
Rhodophyta
Bostrychia moritziana (MF101419)
58860
58788
-
Cys
GCA
[ENA]
¡û
Identical group No.835242 (1 seq.)
>CHL1810050723
MF101452
Rhodophyta
Taenioma perpusillum (MF101452)
55035
54963
-
Cys
GCA
[ENA]
¡û
Identical group No.836953 (1 seq.)
>CHL1810010853
KF861575
Rhodophyta
Gracilaria salicornia (KF861575)
146372
146442
+
Cys
GCA
[ENA]
¡û
Identical group No.836966 (1 seq.)
>CHL1810050395
MF101438
Rhodophyta
Polysiphonia scopulorum (MF101438)
58325
58253
-
Cys
GCA
[ENA]
¡û
Identical group No.836967 (1 seq.)
>CHL1810050471
MF101441
Rhodophyta
Spyridia filamentosa (MF101441)
62301
62229
-
Cys
GCA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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