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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Rhodophyta
Anticodon = GGA
HIT:
8 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.33331 (3 seq.)
>WENV181406164
OGCG01000007
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
83873
83786
-
Ser
GGA
[ENA]
¢þ
>CHL090100041
AB002583
Rhodophyta
Cyanidioschyzon merolae
63141
63228
+
Ser
GGA
[ENA]
¡û
>CHL090101455
AY286123
Rhodophyta
Cyanidioschyzon merolae strain DBV201
2505
2418
-
Ser
GGA
[ENA]
¡û
Identical group No.53209 (2 seq.)
>CHL090100867
AP006715
Rhodophyta
Porphyra yezoensis
127378
127464
+
Ser
GGA
[ENA]
¡û
>CHL090103160
U38804
Rhodophyta
Porphyra purpurea
126058
126145
+
Ser
GGA
[ENA]
¡û
Identical group No.58115 (1 seq.)
>CHL1810045190
KY709209
Rhodophyta
Bulboplastis apyrenoidosa NIES-2742 (KY709209)
70486
70400
-
Ser
GGA
[ENA]
¡û
Identical group No.66616 (1 seq.)
>CHL1810008209
KC464603
Rhodophyta
Pyropia haitanensis (KC464603)
128466
128552
+
Ser
GGA
[ENA]
¡û
Identical group No.76160 (1 seq.)
>CHL1810045155
KY709208
Rhodophyta
Boldia erythrosiphon UTEX LB2858 (KY709208)
65820
65735
-
Ser
GGA
[ENA]
¡û
Identical group No.77476 (1 seq.)
>CHL1810006829
KC153978
Rhodophyta
Calliarthron tuberculosum (KC153978)
48101
48016
-
Ser
GGA
[ENA]
¡û
Identical group No.83917 (1 seq.)
>CHL1810039444
KY083067
Rhodophyta
Compsopogon caeruleus (KY083067)
88006
87919
-
Ser
GGA
[ENA]
¡û
Identical group No.104326 (1 seq.)
>CHL1810038801
KY033529
Rhodophyta
Sheathia arcuata (KY033529)
53762
53676
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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