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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Rhodophyta
Anticodon = GGT
HIT:
17 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.676072 (3 seq.)
>WENV181406168
OGCG01000007
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
77312
77239
-
Thr
GGT
[ENA]
¢þ
>CHL090100045
AB002583
Rhodophyta
Cyanidioschyzon merolae
70620
70693
+
Thr
GGT
[ENA]
¡û
>CHL090101443
AY286123
Rhodophyta
Cyanidioschyzon merolae strain DBV201
144731
144658
-
Thr
GGT
[ENA]
¡û
Identical group No.684391 (1 seq.)
>CHL1810045149
KY709208
Rhodophyta
Boldia erythrosiphon UTEX LB2858 (KY709208)
179496
179567
+
Thr
GGT
[ENA]
¡û
Identical group No.687796 (1 seq.)
>CHL090103175
U38804
Rhodophyta
Porphyra purpurea
120063
119990
-
Thr
GGT
[ENA]
¡û
Identical group No.695939 (1 seq.)
>CHL1810006814
KC153978
Rhodophyta
Calliarthron tuberculosum (KC153978)
53986
54059
+
Thr
GGT
[ENA]
¡û
Identical group No.703883 (1 seq.)
>CHL1810058641
MG598531
Rhodophyta
Grateloupia filicina (MG598531)
98705
98778
+
Thr
GGT
[ENA]
¡û
Identical group No.711731 (1 seq.)
>CHL1810045179
KY709209
Rhodophyta
Bulboplastis apyrenoidosa NIES-2742 (KY709209)
456033
455960
-
Thr
GGT
[ENA]
¡û
Identical group No.732050 (1 seq.)
>CHL1810027993
KU892652
Rhodophyta
Kappaphycus alvarezii (KU892652)
54512
54583
+
Thr
GGT
[ENA]
¡û
Identical group No.735058 (2 seq.)
>CHL1810008224
KC464603
Rhodophyta
Pyropia haitanensis (KC464603)
122210
122137
-
Thr
GGT
[ENA]
¡û
>CHL090100882
AP006715
Rhodophyta
Porphyra yezoensis
121293
121220
-
Thr
GGT
[ENA]
¡û
Identical group No.735157 (1 seq.)
>CHL090100265
AF022186
Rhodophyta
Cyanidium caldarium
84875
84804
-
Thr
GGT
[ENA]
¡û
Identical group No.738481 (1 seq.)
>CHL1810038741
KY018922
Rhodophyta
Gracilaria changii (KY018922)
128877
128804
-
Thr
GGT
[ENA]
¡û
Identical group No.738483 (1 seq.)
>CHL1810038786
KY033529
Rhodophyta
Sheathia arcuata (KY033529)
60206
60277
+
Thr
GGT
[ENA]
¡û
Identical group No.738508 (1 seq.)
>CHL1810060920
MH396013
Rhodophyta
Gracilaria vermiculophylla (MH396013)
152156
152083
-
Thr
GGT
[ENA]
¡û
Identical group No.750898 (1 seq.)
>CHL1810039441
KY083067
Rhodophyta
Compsopogon caeruleus (KY083067)
193363
193434
+
Thr
GGT
[ENA]
¡û
Identical group No.760740 (1 seq.)
>CHL1810000566
AP012987
Rhodophyta
Porphyridium purpureum (AP012987)
61178
61105
-
Thr
GGT
[ENA]
¡û
Identical group No.772151 (1 seq.)
>CHL090101575
AY673996
Rhodophyta
Gracilaria tenuistipitata var. liui
60971
61044
+
Thr
GGT
[ENA]
¡û
Identical group No.778936 (1 seq.)
>CHL1810010848
KF861575
Rhodophyta
Gracilaria salicornia (KF861575)
57262
57335
+
Thr
GGT
[ENA]
¡û
Identical group No.823707 (1 seq.)
>CHL1810024544
KU179794
Rhodophyta
Gracilariopsis lemaneiformis (KU179794)
124031
123957
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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