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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Rhodophyta
Anticodon = GTG
HIT:
51 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.306706 (3 seq.)
>WENV181406163
OGCG01000007
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
87871
87797
-
His
GTG
[ENA]
¢þ
>CHL090100040
AB002583
Rhodophyta
Cyanidioschyzon merolae
59178
59252
+
His
GTG
[ENA]
¡û
>CHL090101454
AY286123
Rhodophyta
Cyanidioschyzon merolae strain DBV201
6479
6405
-
His
GTG
[ENA]
¡û
Identical group No.393203 (1 seq.)
>CHL090100262
AF022186
Rhodophyta
Cyanidium caldarium
96311
96237
-
His
GTG
[ENA]
¡û
Identical group No.480809 (1 seq.)
>CHL1810011900
KJ513670
Rhodophyta
Membranoptera weeksiae (KJ513670)
43742
43815
+
His
GTG
[ENA]
¡û
Identical group No.480871 (1 seq.)
>CHL1810049891
MF101415
Rhodophyta
Osmundaria fimbriata (MF101415)
168331
168257
-
His
GTG
[ENA]
¡û
Identical group No.480876 (2 seq.)
>CHL1810049915
MF101416
Rhodophyta
Caloglossa monosticha (MF101416)
151931
151856
-
His
GTG
[ENA]
¡û
>CHL1810049962
MF101418
Rhodophyta
Caloglossa intermedia (MF101418)
152845
152772
-
His
GTG
[ENA]
¡û
Identical group No.480881 (3 seq.)
>CHL1810050137
MF101425
Rhodophyta
Polysiphonia brodiei (MF101425)
156569
156496
-
His
GTG
[ENA]
¡û
>CHL1810050187
MF101427
Rhodophyta
Polysiphonia elongata (MF101427)
155066
154993
-
His
GTG
[ENA]
¡û
>CHL1810050741
MF101454
Rhodophyta
Polysiphonia schneideri (MF101454)
150088
150015
-
His
GTG
[ENA]
¡û
Identical group No.504568 (1 seq.)
>CHL1810045146
KY709208
Rhodophyta
Boldia erythrosiphon UTEX LB2858 (KY709208)
165776
165849
+
His
GTG
[ENA]
¡û
Identical group No.504574 (5 seq.)
>CHL1810049813
MF101410
Rhodophyta
Laurenciella marilzae (MF101410)
158372
158299
-
His
GTG
[ENA]
¡û
>CHL1810050238
MF101430
Rhodophyta
Bryothamnion seaforthii (MF101430)
162104
162031
-
His
GTG
[ENA]
¡û
>CHL1810050489
MF101442
Rhodophyta
Thuretia quercifolia (MF101442)
160858
160784
-
His
GTG
[ENA]
¡û
>CHL1810050564
MF101445
Rhodophyta
Sonderella linearis (MF101445)
156476
156403
-
His
GTG
[ENA]
¡û
>CHL1810050792
MF101465
Rhodophyta
Digenea simplex (MF101465)
161528
161455
-
His
GTG
[ENA]
¡û
Identical group No.504578 (2 seq.)
>CHL1810050264
MF101432
Rhodophyta
Polysiphonia infestans (MF101432)
152228
152155
-
His
GTG
[ENA]
¡û
>CHL1810050362
MF101437
Rhodophyta
Melanothamnus harveyi (MF101437)
151788
151715
-
His
GTG
[ENA]
¡û
Identical group No.510131 (2 seq.)
>CHL090100880
AP006715
Rhodophyta
Porphyra yezoensis
133840
133767
-
His
GTG
[ENA]
¡û
>CHL090103173
U38804
Rhodophyta
Porphyra purpurea
132523
132450
-
His
GTG
[ENA]
¡û
Identical group No.523581 (1 seq.)
>CHL1810006810
KC153978
Rhodophyta
Calliarthron tuberculosum (KC153978)
42234
42307
+
His
GTG
[ENA]
¡û
Identical group No.523623 (1 seq.)
>CHL1810050012
MF101420
Rhodophyta
Symphyocladia dendroidea (MF101420)
158774
158701
-
His
GTG
[ENA]
¡û
Identical group No.523627 (1 seq.)
>CHL1810050313
MF101434
Rhodophyta
Herposiphonia versicolor (MF101434)
153568
153494
-
His
GTG
[ENA]
¡û
Identical group No.523630 (1 seq.)
>CHL1810050515
MF101443
Rhodophyta
Dasyclonium flaccidum (MF101443)
156884
156811
-
His
GTG
[ENA]
¡û
Identical group No.536465 (1 seq.)
>CHL1810050062
MF101422
Rhodophyta
Caloglossa beccarii (MF101422)
151966
151892
-
His
GTG
[ENA]
¡û
Identical group No.536468 (1 seq.)
>CHL1810050086
MF101423
Rhodophyta
Polysiphonia sertularioides (MF101423)
152807
152734
-
His
GTG
[ENA]
¡û
Identical group No.536471 (1 seq.)
>CHL1810050413
MF101439
Rhodophyta
Vertebrata australis (MF101439)
154209
154136
-
His
GTG
[ENA]
¡û
Identical group No.536474 (1 seq.)
>CHL1810050691
MF101450
Rhodophyta
Cliftonaea pectinata (MF101450)
161381
161308
-
His
GTG
[ENA]
¡û
Identical group No.536480 (1 seq.)
>CHL1810058637
MG598531
Rhodophyta
Grateloupia filicina (MG598531)
84012
84085
+
His
GTG
[ENA]
¡û
Identical group No.549231 (1 seq.)
>CHL1810049939
MF101417
Rhodophyta
Bostrychia tenella (MF101417)
157411
157338
-
His
GTG
[ENA]
¡û
Identical group No.561534 (1 seq.)
>CHL1810050162
MF101426
Rhodophyta
Vertebrata thuyoides (MF101426)
155726
155653
-
His
GTG
[ENA]
¡û
Identical group No.561538 (1 seq.)
>CHL1810050438
MF101440
Rhodophyta
Ophidocladus simpliciusculus (MF101440)
155082
155009
-
His
GTG
[ENA]
¡û
Identical group No.572139 (1 seq.)
>CHL1810050289
MF101433
Rhodophyta
Vertebrata isogona (MF101433)
154262
154189
-
His
GTG
[ENA]
¡û
Identical group No.572142 (2 seq.)
>CHL1810050212
MF101428
Rhodophyta
Polysiphonia stricta (MF101428)
155815
155742
-
His
GTG
[ENA]
¡û
>CHL1810050614
MF101447
Rhodophyta
Thaumatella adunca (MF101447)
156317
156244
-
His
GTG
[ENA]
¡û
Identical group No.581963 (1 seq.)
>CHL1810027989
KU892652
Rhodophyta
Kappaphycus alvarezii (KU892652)
42814
42887
+
His
GTG
[ENA]
¡û
Identical group No.581978 (1 seq.)
>CHL1810049763
MF101408
Rhodophyta
Dipterocladia arabiensis (MF101408)
156940
156867
-
His
GTG
[ENA]
¡û
Identical group No.581983 (1 seq.)
>CHL1810049864
MF101413
Rhodophyta
Periphykon beckeri (MF101413)
155051
154978
-
His
GTG
[ENA]
¡û
Identical group No.581986 (1 seq.)
>CHL1810050640
MF101448
Rhodophyta
Lophocladia kuetzingii (MF101448)
162085
162012
-
His
GTG
[ENA]
¡û
Identical group No.592260 (1 seq.)
>CHL1810038731
KY018922
Rhodophyta
Gracilaria changii (KY018922)
138877
138950
+
His
GTG
[ENA]
¡û
Identical group No.592262 (1 seq.)
>CHL1810038782
KY033529
Rhodophyta
Sheathia arcuata (KY033529)
47777
47851
+
His
GTG
[ENA]
¡û
Identical group No.592280 (1 seq.)
>CHL1810050818
MF101467
Rhodophyta
Tolypiocladia glomerulata (MF101467)
152659
152586
-
His
GTG
[ENA]
¡û
Identical group No.592290 (1 seq.)
>CHL1810060914
MH396013
Rhodophyta
Gracilaria vermiculophylla (MH396013)
162308
162381
+
His
GTG
[ENA]
¡û
Identical group No.601885 (1 seq.)
>CHL1810049839
MF101411
Rhodophyta
Acrosorium ciliolatum (MF101411)
162762
162689
-
His
GTG
[ENA]
¡û
Identical group No.601890 (1 seq.)
>CHL1810050037
MF101421
Rhodophyta
Bostrychia simpliciuscula (MF101421)
154198
154125
-
His
GTG
[ENA]
¡û
Identical group No.601895 (1 seq.)
>CHL1810050540
MF101444
Rhodophyta
Dipterosiphonia australica (MF101444)
155390
155317
-
His
GTG
[ENA]
¡û
Identical group No.611248 (1 seq.)
>CHL1810008222
KC464603
Rhodophyta
Pyropia haitanensis (KC464603)
134928
134855
-
His
GTG
[ENA]
¡û
Identical group No.611305 (1 seq.)
>CHL1810024533
KU179794
Rhodophyta
Gracilariopsis lemaneiformis (KU179794)
134280
134353
+
His
GTG
[ENA]
¡û
Identical group No.611312 (1 seq.)
>CHL1810039438
KY083067
Rhodophyta
Compsopogon caeruleus (KY083067)
180894
180967
+
His
GTG
[ENA]
¡û
Identical group No.611323 (1 seq.)
>CHL1810050337
MF101436
Rhodophyta
Dasya naccarioides (MF101436)
157411
157338
-
His
GTG
[ENA]
¡û
Identical group No.619487 (1 seq.)
>CHL1810050666
MF101449
Rhodophyta
Kuetzingia canaliculata (MF101449)
164235
164162
-
His
GTG
[ENA]
¡û
Identical group No.627275 (1 seq.)
>CHL1810000553
AP012987
Rhodophyta
Porphyridium purpureum (AP012987)
172308
172381
+
His
GTG
[ENA]
¡û
Identical group No.639050 (1 seq.)
>CHL1810049788
MF101409
Rhodophyta
Platysiphonia delicata (MF101409)
157900
157827
-
His
GTG
[ENA]
¡û
Identical group No.639053 (2 seq.)
>CHL1810050589
MF101446
Rhodophyta
Gredgaria maugeana (MF101446)
154772
154699
-
His
GTG
[ENA]
¡û
>CHL1810050766
MF101455
Rhodophyta
Dictyomenia sonderi (MF101455)
155596
155523
-
His
GTG
[ENA]
¡û
Identical group No.641648 (1 seq.)
>CHL090101591
AY673996
Rhodophyta
Gracilaria tenuistipitata var. liui
50872
50799
-
His
GTG
[ENA]
¡û
Identical group No.646352 (1 seq.)
>CHL1810049986
MF101419
Rhodophyta
Bostrychia moritziana (MF101419)
158357
158284
-
His
GTG
[ENA]
¡û
Identical group No.646353 (1 seq.)
>CHL1810050716
MF101452
Rhodophyta
Taenioma perpusillum (MF101452)
150605
150532
-
His
GTG
[ENA]
¡û
Identical group No.652666 (1 seq.)
>CHL1810010864
KF861575
Rhodophyta
Gracilaria salicornia (KF861575)
47143
47070
-
His
GTG
[ENA]
¡û
Identical group No.652694 (1 seq.)
>CHL1810050111
MF101424
Rhodophyta
Rhodomela confervoides (MF101424)
162175
162102
-
His
GTG
[ENA]
¡û
Identical group No.652696 (1 seq.)
>CHL1810050387
MF101438
Rhodophyta
Polysiphonia scopulorum (MF101438)
154793
154720
-
His
GTG
[ENA]
¡û
Identical group No.652699 (1 seq.)
>CHL1810050464
MF101441
Rhodophyta
Spyridia filamentosa (MF101441)
161703
161630
-
His
GTG
[ENA]
¡û
Identical group No.711729 (1 seq.)
>CHL1810045166
KY709209
Rhodophyta
Bulboplastis apyrenoidosa NIES-2742 (KY709209)
57469
57541
+
His
GTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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