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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Rhodophyta
Anticodon = TAA
HIT:
44 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.70755 (1 seq.)
>CHL1810049796
MF101409
Rhodophyta
Platysiphonia delicata (MF101409)
59084
58996
-
Leu
TAA
[ENA]
¡û
Identical group No.72565 (1 seq.)
>CHL1810050396
MF101438
Rhodophyta
Polysiphonia scopulorum (MF101438)
58229
58143
-
Leu
TAA
[ENA]
¡û
Identical group No.72566 (1 seq.)
>CHL1810050472
MF101441
Rhodophyta
Spyridia filamentosa (MF101441)
62103
62015
-
Leu
TAA
[ENA]
¡û
Identical group No.74559 (1 seq.)
>CHL1810049900
MF101415
Rhodophyta
Osmundaria fimbriata (MF101415)
63765
63678
-
Leu
TAA
[ENA]
¡û
Identical group No.74560 (1 seq.)
>CHL1810049923
MF101416
Rhodophyta
Caloglossa monosticha (MF101416)
55370
55285
-
Leu
TAA
[ENA]
¡û
Identical group No.74562 (4 seq.)
>CHL1810050145
MF101425
Rhodophyta
Polysiphonia brodiei (MF101425)
57490
57403
-
Leu
TAA
[ENA]
¡û
>CHL1810050195
MF101427
Rhodophyta
Polysiphonia elongata (MF101427)
57817
57732
-
Leu
TAA
[ENA]
¡û
>CHL1810050272
MF101432
Rhodophyta
Polysiphonia infestans (MF101432)
56808
56723
-
Leu
TAA
[ENA]
¡û
>CHL1810050598
MF101446
Rhodophyta
Gredgaria maugeana (MF101446)
58275
58188
-
Leu
TAA
[ENA]
¡û
Identical group No.75164 (3 seq.)
>WENV181406157
OGCG01000007
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
136626
136541
-
Leu
TAA
[ENA]
¢þ
>CHL090100034
AB002583
Rhodophyta
Cyanidioschyzon merolae
10457
10542
+
Leu
TAA
[ENA]
¡û
>CHL090101448
AY286123
Rhodophyta
Cyanidioschyzon merolae strain DBV201
54922
54837
-
Leu
TAA
[ENA]
¡û
Identical group No.76162 (12 seq.)
>CHL1810049822
MF101410
Rhodophyta
Laurenciella marilzae (MF101410)
59864
59779
-
Leu
TAA
[ENA]
¡û
>CHL1810049847
MF101411
Rhodophyta
Acrosorium ciliolatum (MF101411)
61769
61684
-
Leu
TAA
[ENA]
¡û
>CHL1810049995
MF101419
Rhodophyta
Bostrychia moritziana (MF101419)
58756
58671
-
Leu
TAA
[ENA]
¡û
>CHL1810050094
MF101423
Rhodophyta
Polysiphonia sertularioides (MF101423)
57411
57326
-
Leu
TAA
[ENA]
¡û
>CHL1810050170
MF101426
Rhodophyta
Vertebrata thuyoides (MF101426)
57838
57751
-
Leu
TAA
[ENA]
¡û
>CHL1810050221
MF101428
Rhodophyta
Polysiphonia stricta (MF101428)
58844
58757
-
Leu
TAA
[ENA]
¡û
>CHL1810050247
MF101430
Rhodophyta
Bryothamnion seaforthii (MF101430)
64213
64128
-
Leu
TAA
[ENA]
¡û
>CHL1810050297
MF101433
Rhodophyta
Vertebrata isogona (MF101433)
57855
57770
-
Leu
TAA
[ENA]
¡û
>CHL1810050370
MF101437
Rhodophyta
Melanothamnus harveyi (MF101437)
56390
56305
-
Leu
TAA
[ENA]
¡û
>CHL1810050421
MF101439
Rhodophyta
Vertebrata australis (MF101439)
57925
57840
-
Leu
TAA
[ENA]
¡û
>CHL1810050548
MF101444
Rhodophyta
Dipterosiphonia australica (MF101444)
58199
58114
-
Leu
TAA
[ENA]
¡û
>CHL1810050826
MF101467
Rhodophyta
Tolypiocladia glomerulata (MF101467)
57117
57032
-
Leu
TAA
[ENA]
¡û
Identical group No.77480 (1 seq.)
>CHL1810050021
MF101420
Rhodophyta
Symphyocladia dendroidea (MF101420)
58270
58183
-
Leu
TAA
[ENA]
¡û
Identical group No.77482 (2 seq.)
>CHL1810050322
MF101434
Rhodophyta
Herposiphonia versicolor (MF101434)
57957
57871
-
Leu
TAA
[ENA]
¡û
>CHL1810050801
MF101465
Rhodophyta
Digenea simplex (MF101465)
60390
60305
-
Leu
TAA
[ENA]
¡û
Identical group No.77483 (1 seq.)
>CHL1810050523
MF101443
Rhodophyta
Dasyclonium flaccidum (MF101443)
59619
59534
-
Leu
TAA
[ENA]
¡û
Identical group No.78409 (1 seq.)
>CHL1810050070
MF101422
Rhodophyta
Caloglossa beccarii (MF101422)
55932
55845
-
Leu
TAA
[ENA]
¡û
Identical group No.78411 (1 seq.)
>CHL1810050700
MF101450
Rhodophyta
Cliftonaea pectinata (MF101450)
62057
61972
-
Leu
TAA
[ENA]
¡û
Identical group No.80232 (1 seq.)
>CHL1810050447
MF101440
Rhodophyta
Ophidocladus simpliciusculus (MF101440)
58397
58311
-
Leu
TAA
[ENA]
¡û
Identical group No.80233 (1 seq.)
>CHL1810050498
MF101442
Rhodophyta
Thuretia quercifolia (MF101442)
61239
61154
-
Leu
TAA
[ENA]
¡û
Identical group No.81051 (1 seq.)
>CHL1810049970
MF101418
Rhodophyta
Caloglossa intermedia (MF101418)
55574
55489
-
Leu
TAA
[ENA]
¡û
Identical group No.81054 (2 seq.)
>CHL1810050623
MF101447
Rhodophyta
Thaumatella adunca (MF101447)
59059
58974
-
Leu
TAA
[ENA]
¡û
>CHL1810050674
MF101449
Rhodophyta
Kuetzingia canaliculata (MF101449)
62181
62096
-
Leu
TAA
[ENA]
¡û
Identical group No.81056 (1 seq.)
>CHL1810050749
MF101454
Rhodophyta
Polysiphonia schneideri (MF101454)
55351
55266
-
Leu
TAA
[ENA]
¡û
Identical group No.81802 (1 seq.)
>CHL1810049772
MF101408
Rhodophyta
Dipterocladia arabiensis (MF101408)
59055
58970
-
Leu
TAA
[ENA]
¡û
Identical group No.81804 (1 seq.)
>CHL1810049874
MF101413
Rhodophyta
Periphykon beckeri (MF101413)
58850
58765
-
Leu
TAA
[ENA]
¡û
Identical group No.85003 (1 seq.)
>CHL1810050573
MF101445
Rhodophyta
Sonderella linearis (MF101445)
59088
59003
-
Leu
TAA
[ENA]
¡û
Identical group No.85813 (1 seq.)
>CHL1810050775
MF101455
Rhodophyta
Dictyomenia sonderi (MF101455)
58252
58167
-
Leu
TAA
[ENA]
¡û
Identical group No.86815 (1 seq.)
>CHL1810050120
MF101424
Rhodophyta
Rhodomela confervoides (MF101424)
59338
59253
-
Leu
TAA
[ENA]
¡û
Identical group No.90112 (1 seq.)
>CHL1810011909
KJ513670
Rhodophyta
Membranoptera weeksiae (KJ513670)
144392
144479
+
Leu
TAA
[ENA]
¡û
Identical group No.93042 (1 seq.)
>CHL1810045158
KY709208
Rhodophyta
Boldia erythrosiphon UTEX LB2858 (KY709208)
51743
51659
-
Leu
TAA
[ENA]
¡û
Identical group No.93778 (2 seq.)
>CHL090100864
AP006715
Rhodophyta
Porphyra yezoensis
32753
32837
+
Leu
TAA
[ENA]
¡û
>CHL090103157
U38804
Rhodophyta
Porphyra purpurea
32634
32718
+
Leu
TAA
[ENA]
¡û
Identical group No.95328 (2 seq.)
>CHL1810006820
KC153978
Rhodophyta
Calliarthron tuberculosum (KC153978)
145625
145711
+
Leu
TAA
[ENA]
¡û
>CHL1810058630
MG598531
Rhodophyta
Grateloupia filicina (MG598531)
3247
3331
+
Leu
TAA
[ENA]
¡û
Identical group No.98686 (1 seq.)
>CHL1810049948
MF101417
Rhodophyta
Bostrychia tenella (MF101417)
59417
59333
-
Leu
TAA
[ENA]
¡û
Identical group No.102980 (1 seq.)
>CHL1810027999
KU892652
Rhodophyta
Kappaphycus alvarezii (KU892652)
143591
143675
+
Leu
TAA
[ENA]
¡û
Identical group No.102982 (1 seq.)
>CHL1810050649
MF101448
Rhodophyta
Lophocladia kuetzingii (MF101448)
58599
58513
-
Leu
TAA
[ENA]
¡û
Identical group No.103688 (1 seq.)
>CHL090100248
AF022186
Rhodophyta
Cyanidium caldarium
106207
106291
+
Leu
TAA
[ENA]
¡û
Identical group No.104325 (1 seq.)
>CHL1810038747
KY018922
Rhodophyta
Gracilaria changii (KY018922)
40142
40058
-
Leu
TAA
[ENA]
¡û
Identical group No.104329 (1 seq.)
>CHL1810060926
MH396013
Rhodophyta
Gracilaria vermiculophylla (MH396013)
62796
62710
-
Leu
TAA
[ENA]
¡û
Identical group No.105600 (1 seq.)
>CHL1810050046
MF101421
Rhodophyta
Bostrychia simpliciuscula (MF101421)
57005
56921
-
Leu
TAA
[ENA]
¡û
Identical group No.106838 (1 seq.)
>CHL1810024550
KU179794
Rhodophyta
Gracilariopsis lemaneiformis (KU179794)
34228
34144
-
Leu
TAA
[ENA]
¡û
Identical group No.106840 (1 seq.)
>CHL1810039447
KY083067
Rhodophyta
Compsopogon caeruleus (KY083067)
73845
73759
-
Leu
TAA
[ENA]
¡û
Identical group No.110810 (1 seq.)
>CHL090101581
AY673996
Rhodophyta
Gracilaria tenuistipitata var. liui
150379
150465
+
Leu
TAA
[ENA]
¡û
Identical group No.111383 (1 seq.)
>CHL1810050724
MF101452
Rhodophyta
Taenioma perpusillum (MF101452)
54937
54853
-
Leu
TAA
[ENA]
¡û
Identical group No.112141 (1 seq.)
>CHL1810010854
KF861575
Rhodophyta
Gracilaria salicornia (KF861575)
146457
146543
+
Leu
TAA
[ENA]
¡û
Identical group No.140700 (1 seq.)
>CHL1810038792
KY033529
Rhodophyta
Sheathia arcuata (KY033529)
153669
153752
+
Leu
TAA
[ENA]
¡û
Identical group No.144742 (1 seq.)
>CHL1810008206
KC464603
Rhodophyta
Pyropia haitanensis (KC464603)
32686
32769
+
Leu
TAA
[ENA]
¡û
Identical group No.144751 (1 seq.)
>CHL1810050345
MF101436
Rhodophyta
Dasya naccarioides (MF101436)
58360
58277
-
Leu
TAA
[ENA]
¡û
Identical group No.148001 (1 seq.)
>CHL1810000560
AP012987
Rhodophyta
Porphyridium purpureum (AP012987)
159599
159514
-
Leu
TAA
[ENA]
¡û
Identical group No.230488 (1 seq.)
>CHL1810045181
KY709209
Rhodophyta
Bulboplastis apyrenoidosa NIES-2742 (KY709209)
389831
389750
-
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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