tRNA genes clustered and arranged according to each identical group

Rhodophyta

Anticodon = TAC

HIT: 25 Group(s).
Download Sequence Representative sequence of each cluster
View ClustalW result
Sort by Identical group No. Sort by the number of tRNAs in the Identical group
Select
Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Identical group No.504563 (1 seq.)
>CHL1810045136 KY709208 Rhodophyta Boldia erythrosiphon UTEX LB2858 (KY709208) 17774 17847 + Val TAC [ENA] ¡û
Identical group No.611311 (1 seq.)
>CHL1810039428 KY083067 Rhodophyta Compsopogon caeruleus (KY083067) 40318 40390 + Val TAC [ENA] ¡û
Identical group No.652700 (1 seq.)
>CHL1810050473 MF101441 Rhodophyta Spyridia filamentosa (MF101441) 30076 30004 - Val TAC [ENA] ¡û
Identical group No.666326 (13 seq.)
>WENV182548215 OJBV01003030 [OJBV] seawater metagenome; Sea water 1745 1818 + Val TAC [ENA] ¢þ
>WENV182551313 OJCC01001232 [OJCC] seawater metagenome; Sea water 925 851 - Val TAC [ENA] ¢þ
>WENV182568428 OJEU01000023 [OJEU] seawater metagenome; Sea water 1790 1863 + Val TAC [ENA] ¢þ
>WENV182569476 OJEZ01000987 [OJEZ] seawater metagenome; Sea water 1529 1603 + Val TAC [ENA] ¢þ
>WENV182570788 OJFF01000865 [OJFF] seawater metagenome; Sea water 1264 1337 + Val TAC [ENA] ¢þ
>WENV182578341 OJGN01000504 [OJGN] seawater metagenome; Sea water 1790 1863 + Val TAC [ENA] ¢þ
>WENV182587120 OJHL01001276 [OJHL] seawater metagenome; Sea water 815 888 + Val TAC [ENA] ¢þ
>WENV182590205 OJIH01004271 [OJIH] seawater metagenome; Sea water 438 512 + Val TAC [ENA] ¢þ
>WENV182592151 OJIQ01000608 [OJIQ] seawater metagenome; Sea water 1877 1950 + Val TAC [ENA] ¢þ
>WENV170327140 CESU01047800 [CESU] marine metagenome genome assembly TARA_082_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 355 282 - Val TAC [ENA] ¢þ
>WENV170533194 CEWO01105649 [CEWO] marine metagenome genome assembly TARA_145_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 732 805 + Val TAC [ENA] ¢þ
>WENV170805150 MDSW01060066 [MDSW] marine metagenome; seawater 766 839 + Val TAC [ENA] ¢þ
>CHL1810050273 MF101432 Rhodophyta Polysiphonia infestans (MF101432) 28979 28908 - Val TAC [ENA] ¡û
Identical group No.670034 (1 seq.)
>CHL1810011910 KJ513670 Rhodophyta Membranoptera weeksiae (KJ513670) 174527 174598 + Val TAC [ENA] ¡û
Identical group No.670128 (22 seq.)
>CHL1810008214 KC464603 Rhodophyta Pyropia haitanensis (KC464603) 188894 188965 + Val TAC [ENA] ¡û
>CHL1810038793 KY033529 Rhodophyta Sheathia arcuata (KY033529) 185589 185660 + Val TAC [ENA] ¡û
>CHL1810049848 MF101411 Rhodophyta Acrosorium ciliolatum (MF101411) 30315 30244 - Val TAC [ENA] ¡û
>CHL1810049901 MF101415 Rhodophyta Osmundaria fimbriata (MF101415) 30467 30396 - Val TAC [ENA] ¡û
>CHL1810050022 MF101420 Rhodophyta Symphyocladia dendroidea (MF101420) 29451 29379 - Val TAC [ENA] ¡û
>CHL1810050121 MF101424 Rhodophyta Rhodomela confervoides (MF101424) 29869 29796 - Val TAC [ENA] ¡û
>CHL1810050171 MF101426 Rhodophyta Vertebrata thuyoides (MF101426) 29199 29128 - Val TAC [ENA] ¡û
>CHL1810050196 MF101427 Rhodophyta Polysiphonia elongata (MF101427) 29378 29307 - Val TAC [ENA] ¡û
>CHL1810050222 MF101428 Rhodophyta Polysiphonia stricta (MF101428) 29705 29633 - Val TAC [ENA] ¡û
>CHL1810050298 MF101433 Rhodophyta Vertebrata isogona (MF101433) 29235 29164 - Val TAC [ENA] ¡û
>CHL1810050397 MF101438 Rhodophyta Polysiphonia scopulorum (MF101438) 29505 29434 - Val TAC [ENA] ¡û
>CHL1810050422 MF101439 Rhodophyta Vertebrata australis (MF101439) 29220 29149 - Val TAC [ENA] ¡û
>CHL1810050499 MF101442 Rhodophyta Thuretia quercifolia (MF101442) 31330 31259 - Val TAC [ENA] ¡û
>CHL1810050599 MF101446 Rhodophyta Gredgaria maugeana (MF101446) 29511 29440 - Val TAC [ENA] ¡û
>CHL1810050624 MF101447 Rhodophyta Thaumatella adunca (MF101447) 29789 29718 - Val TAC [ENA] ¡û
>CHL1810050675 MF101449 Rhodophyta Kuetzingia canaliculata (MF101449) 31338 31267 - Val TAC [ENA] ¡û
>CHL1810050750 MF101454 Rhodophyta Polysiphonia schneideri (MF101454) 28168 28097 - Val TAC [ENA] ¡û
>CHL1810050802 MF101465 Rhodophyta Digenea simplex (MF101465) 29589 29517 - Val TAC [ENA] ¡û
>CHL1810050827 MF101467 Rhodophyta Tolypiocladia glomerulata (MF101467) 29020 28949 - Val TAC [ENA] ¡û
>CHL090100364 AF166114 Viridiplantae Mesostigma viride 27333 27262 - Val TAC [ENA] ¡û
>CHL090100872 AP006715 Rhodophyta Porphyra yezoensis 185249 185320 + Val TAC [ENA] ¡û
>CHL090103165 U38804 Rhodophyta Porphyra purpurea 184343 184414 + Val TAC [ENA] ¡û
Identical group No.670132 (2 seq.)
>CHL1810049924 MF101416 Rhodophyta Caloglossa monosticha (MF101416) 27025 26954 - Val TAC [ENA] ¡û
>CHL1810049971 MF101418 Rhodophyta Caloglossa intermedia (MF101418) 26953 26882 - Val TAC [ENA] ¡û
Identical group No.670135 (1 seq.)
>CHL1810050146 MF101425 Rhodophyta Polysiphonia brodiei (MF101425) 29178 29107 - Val TAC [ENA] ¡û
Identical group No.676074 (3 seq.)
>WENV181406142 OGCG01000007 [OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA 20862 20933 + Val TAC [ENA] ¢þ
>CHL090100050 AB002583 Rhodophyta Cyanidioschyzon merolae 127074 127003 - Val TAC [ENA] ¡û
>CHL090101432 AY286123 Rhodophyta Cyanidioschyzon merolae strain DBV201 88256 88327 + Val TAC [ENA] ¡û
Identical group No.682188 (15 seq.)
>WENV170022128 BCQK01000507 [BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama 4666 4739 + Val TAC [ENA] ¢þ
>WENV170023251 BCQK01181030 [BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama 296 367 + Val TAC [ENA] ¢þ
>WENV170023637 BCQL01000522 [BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa 7567 7638 + Val TAC [ENA] ¢þ
>WENV170025494 BCQL01352518 [BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa 172 99 - Val TAC [ENA] ¢þ
>CHL1810024551 KU179794 Rhodophyta Gracilariopsis lemaneiformis (KU179794) 1527 1456 - Val TAC [ENA] ¡û
>CHL1810028001 KU892652 Rhodophyta Kappaphycus alvarezii (KU892652) 167145 167073 - Val TAC [ENA] ¡û
>CHL1810038748 KY018922 Rhodophyta Gracilaria changii (KY018922) 3999 3928 - Val TAC [ENA] ¡û
>CHL1810049773 MF101408 Rhodophyta Dipterocladia arabiensis (MF101408) 29915 29844 - Val TAC [ENA] ¡û
>CHL1810050346 MF101436 Rhodophyta Dasya naccarioides (MF101436) 29284 29213 - Val TAC [ENA] ¡û
>CHL1810050524 MF101443 Rhodophyta Dasyclonium flaccidum (MF101443) 30293 30222 - Val TAC [ENA] ¡û
>CHL1810050650 MF101448 Rhodophyta Lophocladia kuetzingii (MF101448) 29530 29459 - Val TAC [ENA] ¡û
>CHL1810050701 MF101450 Rhodophyta Cliftonaea pectinata (MF101450) 33021 32950 - Val TAC [ENA] ¡û
>CHL1810050776 MF101455 Rhodophyta Dictyomenia sonderi (MF101455) 29408 29337 - Val TAC [ENA] ¡û
>CHL1810058631 MG598531 Rhodophyta Grateloupia filicina (MG598531) 36920 36991 + Val TAC [ENA] ¡û
>CHL1810060927 MH396013 Rhodophyta Gracilaria vermiculophylla (MH396013) 30897 30826 - Val TAC [ENA] ¡û
Identical group No.683353 (28 seq.)
>WENV180110854 OAPN01010240 [OAPN] marine metagenome; 2011 793 722 - Val TAC [ENA] ¢þ
>WENV180591905 OCOV01132936 [OCOV] marine metagenome; ENVO:01000301 95 22 - Val TAC [ENA] ¢þ
>WENV180638177 OCRH01027433 [OCRH] marine metagenome; ENVO_00002010 408 335 - Val TAC [ENA] ¢þ
>WENV181092418 OEBK01000502 [OEBK] marine metagenome; ENVO:00002010 for 'seawater 1351 1278 - Val TAC [ENA] ¢þ
>WENV181852487 OGWF01029057 [OGWF] freshwater metagenome; freshwater 296 225 - Val TAC [ENA] ¢þ
>WENV182569315 OJEY01011188 [OJEY] seawater metagenome; Sea water 10 83 + Val TAC [ENA] ¢þ
>WENV183054116 OLGR01016766 [OLGR] seawater metagenome; Sea water 286 213 - Val TAC [ENA] ¢þ
>WENV183620146 OOFR01009443 [OOFR] marine metagenome; seawater 439 510 + Val TAC [ENA] ¢þ
>WENV170274296 CERM01008904 [CERM] marine metagenome genome assembly TARA_067_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 193 121 - Val TAC [ENA] ¢þ
>WENV170297717 CESE01275464 [CESE] marine metagenome genome assembly TARA_085_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1053 1126 + Val TAC [ENA] ¢þ
>WENV170307702 CESJ01285128 [CESJ] marine metagenome genome assembly TARA_084_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1758 1685 - Val TAC [ENA] ¢þ
>WENV170325754 CEST01052204 [CEST] marine metagenome genome assembly TARA_085_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 1762 1689 - Val TAC [ENA] ¢þ
>WENV170440211 CEUV01079276 [CEUV] marine metagenome genome assembly TARA_123_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 152 225 + Val TAC [ENA] ¢þ
>WENV170494361 CEVR01079012 [CEVR] marine metagenome genome assembly TARA_148_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 609 536 - Val TAC [ENA] ¢þ
>WENV170509934 CEVY01085822 [CEVY] marine metagenome genome assembly TARA_065_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 413 340 - Val TAC [ENA] ¢þ
>WENV170533625 CEWO01148500 [CEWO] marine metagenome genome assembly TARA_145_SRF_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 228 301 + Val TAC [ENA] ¢þ
>WENV170536923 CEWP01330811 [CEWP] marine metagenome genome assembly TARA_067_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx) 289 216 - Val TAC [ENA] ¢þ
>WENV170804800 MDSW01053602 [MDSW] marine metagenome; seawater 2350 2277 - Val TAC [ENA] ¢þ
>WENV170814554 MDSW01219080 [MDSW] marine metagenome; seawater 3750 3823 + Val TAC [ENA] ¢þ
>WENV170815884 MDSX01018727 [MDSX] marine metagenome; seawater 76 3 - Val TAC [ENA] ¢þ
>WENV170818530 MDSX01073619 [MDSX] marine metagenome; seawater 12995 13067 + Val TAC [ENA] ¢þ
>WENV170899284 MDTD01137239 [MDTD] marine metagenome; seawater 178 105 - Val TAC [ENA] ¢þ
>WENV170918685 MDTF01002570 [MDTF] marine metagenome; seawater 3883 3956 + Val TAC [ENA] ¢þ
>CHL1810049823 MF101410 Rhodophyta Laurenciella marilzae (MF101410) 29669 29598 - Val TAC [ENA] ¡û
>CHL1810049949 MF101417 Rhodophyta Bostrychia tenella (MF101417) 29103 29032 - Val TAC [ENA] ¡û
>CHL1810049996 MF101419 Rhodophyta Bostrychia moritziana (MF101419) 29506 29435 - Val TAC [ENA] ¡û
>CHL1810050725 MF101452 Rhodophyta Taenioma perpusillum (MF101452) 27066 26995 - Val TAC [ENA] ¡û
>CHL090103044 EF508371 Cryptophyta Rhodomonas salina 47623 47551 - Val TAC [ENA] ¡û
Identical group No.684403 (1 seq.)
>CHL1810050248 MF101430 Rhodophyta Bryothamnion seaforthii (MF101430) 29569 29498 - Val TAC [ENA] ¡û
Identical group No.684405 (2 seq.)
>CHL1810050371 MF101437 Rhodophyta Melanothamnus harveyi (MF101437) 29099 29028 - Val TAC [ENA] ¡û
>CHL1810050549 MF101444 Rhodophyta Dipterosiphonia australica (MF101444) 29395 29323 - Val TAC [ENA] ¡û
Identical group No.695941 (1 seq.)
>CHL1810006821 KC153978 Rhodophyta Calliarthron tuberculosum (KC153978) 177522 177595 + Val TAC [ENA] ¡û
Identical group No.703867 (1 seq.)
>CHL1810050071 MF101422 Rhodophyta Caloglossa beccarii (MF101422) 27412 27341 - Val TAC [ENA] ¡û
Identical group No.703868 (1 seq.)
>CHL1810050095 MF101423 Rhodophyta Polysiphonia sertularioides (MF101423) 29137 29066 - Val TAC [ENA] ¡û
Identical group No.711734 (1 seq.)
>CHL1810045188 KY709209 Rhodophyta Bulboplastis apyrenoidosa NIES-2742 (KY709209) 70703 70632 - Val TAC [ENA] ¡û
Identical group No.719403 (2 seq.)
>CHL1810050047 MF101421 Rhodophyta Bostrychia simpliciuscula (MF101421) 28940 28869 - Val TAC [ENA] ¡û
>CHL1810050448 MF101440 Rhodophyta Ophidocladus simpliciusculus (MF101440) 29482 29411 - Val TAC [ENA] ¡û
Identical group No.732071 (1 seq.)
>CHL1810049875 MF101413 Rhodophyta Periphykon beckeri (MF101413) 30121 30048 - Val TAC [ENA] ¡û
Identical group No.735155 (1 seq.)
>CHL090100255 AF022186 Rhodophyta Cyanidium caldarium 124358 124287 - Val TAC [ENA] ¡û
Identical group No.760736 (1 seq.)
>CHL1810000546 AP012987 Rhodophyta Porphyridium purpureum (AP012987) 27334 27405 + Val TAC [ENA] ¡û
Identical group No.760796 (1 seq.)
>CHL1810050574 MF101445 Rhodophyta Sonderella linearis (MF101445) 29336 29265 - Val TAC [ENA] ¡û
Identical group No.770464 (1 seq.)
>CHL1810049797 MF101409 Rhodophyta Platysiphonia delicata (MF101409) 30030 29959 - Val TAC [ENA] ¡û
Identical group No.772152 (1 seq.)
>CHL090101582 AY673996 Rhodophyta Gracilaria tenuistipitata var. liui 182382 182453 + Val TAC [ENA] ¡û
Identical group No.778937 (1 seq.)
>CHL1810010855 KF861575 Rhodophyta Gracilaria salicornia (KF861575) 178273 178344 + Val TAC [ENA] ¡û
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Sequence ID Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species Start End Direction AA Anticodon Genome/Seq. Info. Decision
Download Sequence Representative sequence of each cluster
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