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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Rhodophyta
Anticodon = TAG
HIT:
44 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.157074 (1 seq.)
>CHL1810011896
KJ513670
Rhodophyta
Membranoptera weeksiae (KJ513670)
5964
6048
+
Leu
TAG
[ENA]
¡û
Identical group No.157080 (9 seq.)
>CHL1810049903
MF101415
Rhodophyta
Osmundaria fimbriata (MF101415)
23585
23501
-
Leu
TAG
[ENA]
¡û
>CHL1810050123
MF101424
Rhodophyta
Rhodomela confervoides (MF101424)
23155
23070
-
Leu
TAG
[ENA]
¡û
>CHL1810050148
MF101425
Rhodophyta
Polysiphonia brodiei (MF101425)
22689
22607
-
Leu
TAG
[ENA]
¡û
>CHL1810050250
MF101430
Rhodophyta
Bryothamnion seaforthii (MF101430)
22947
22865
-
Leu
TAG
[ENA]
¡û
>CHL1810050324
MF101434
Rhodophyta
Herposiphonia versicolor (MF101434)
22840
22758
-
Leu
TAG
[ENA]
¡û
>CHL1810050450
MF101440
Rhodophyta
Ophidocladus simpliciusculus (MF101440)
22900
22818
-
Leu
TAG
[ENA]
¡û
>CHL1810050526
MF101443
Rhodophyta
Dasyclonium flaccidum (MF101443)
23667
23584
-
Leu
TAG
[ENA]
¡û
>CHL1810050551
MF101444
Rhodophyta
Dipterosiphonia australica (MF101444)
22917
22835
-
Leu
TAG
[ENA]
¡û
>CHL1810050804
MF101465
Rhodophyta
Digenea simplex (MF101465)
22938
22856
-
Leu
TAG
[ENA]
¡û
Identical group No.157081 (1 seq.)
>CHL1810049926
MF101416
Rhodophyta
Caloglossa monosticha (MF101416)
20539
20457
-
Leu
TAG
[ENA]
¡û
Identical group No.160115 (4 seq.)
>CHL1810050173
MF101426
Rhodophyta
Vertebrata thuyoides (MF101426)
22742
22658
-
Leu
TAG
[ENA]
¡û
>CHL1810050300
MF101433
Rhodophyta
Vertebrata isogona (MF101433)
22762
22680
-
Leu
TAG
[ENA]
¡û
>CHL1810050373
MF101437
Rhodophyta
Melanothamnus harveyi (MF101437)
22637
22555
-
Leu
TAG
[ENA]
¡û
>CHL1810050424
MF101439
Rhodophyta
Vertebrata australis (MF101439)
22737
22653
-
Leu
TAG
[ENA]
¡û
Identical group No.160821 (3 seq.)
>CHL1810008235
KC464603
Rhodophyta
Pyropia haitanensis (KC464603)
21673
21589
-
Leu
TAG
[ENA]
¡û
>CHL090100893
AP006715
Rhodophyta
Porphyra yezoensis
21689
21605
-
Leu
TAG
[ENA]
¡û
>CHL090103184
U38804
Rhodophyta
Porphyra purpurea
21699
21615
-
Leu
TAG
[ENA]
¡û
Identical group No.162466 (1 seq.)
>CHL1810006806
KC153978
Rhodophyta
Calliarthron tuberculosum (KC153978)
4977
5060
+
Leu
TAG
[ENA]
¡û
Identical group No.162469 (1 seq.)
>CHL1810050024
MF101420
Rhodophyta
Symphyocladia dendroidea (MF101420)
22904
22820
-
Leu
TAG
[ENA]
¡û
Identical group No.164189 (1 seq.)
>CHL1810050073
MF101422
Rhodophyta
Caloglossa beccarii (MF101422)
20892
20810
-
Leu
TAG
[ENA]
¡û
Identical group No.164190 (2 seq.)
>CHL1810049998
MF101419
Rhodophyta
Bostrychia moritziana (MF101419)
22944
22862
-
Leu
TAG
[ENA]
¡û
>CHL1810050097
MF101423
Rhodophyta
Polysiphonia sertularioides (MF101423)
22623
22541
-
Leu
TAG
[ENA]
¡û
Identical group No.164191 (4 seq.)
>CHL1810049775
MF101408
Rhodophyta
Dipterocladia arabiensis (MF101408)
23111
23027
-
Leu
TAG
[ENA]
¡û
>CHL1810050224
MF101428
Rhodophyta
Polysiphonia stricta (MF101428)
23102
23020
-
Leu
TAG
[ENA]
¡û
>CHL1810050348
MF101436
Rhodophyta
Dasya naccarioides (MF101436)
22716
22634
-
Leu
TAG
[ENA]
¡û
>CHL1810050703
MF101450
Rhodophyta
Cliftonaea pectinata (MF101450)
26319
26237
-
Leu
TAG
[ENA]
¡û
Identical group No.164192 (1 seq.)
>CHL1810058633
MG598531
Rhodophyta
Grateloupia filicina (MG598531)
43833
43917
+
Leu
TAG
[ENA]
¡û
Identical group No.165854 (1 seq.)
>CHL1810049951
MF101417
Rhodophyta
Bostrychia tenella (MF101417)
23162
23080
-
Leu
TAG
[ENA]
¡û
Identical group No.167559 (1 seq.)
>CHL1810050501
MF101442
Rhodophyta
Thuretia quercifolia (MF101442)
24510
24426
-
Leu
TAG
[ENA]
¡û
Identical group No.168957 (1 seq.)
>CHL1810049973
MF101418
Rhodophyta
Caloglossa intermedia (MF101418)
20457
20375
-
Leu
TAG
[ENA]
¡û
Identical group No.168958 (2 seq.)
>CHL1810050275
MF101432
Rhodophyta
Polysiphonia infestans (MF101432)
22518
22433
-
Leu
TAG
[ENA]
¡û
>CHL1810050626
MF101447
Rhodophyta
Thaumatella adunca (MF101447)
23100
23015
-
Leu
TAG
[ENA]
¡û
Identical group No.168959 (1 seq.)
>CHL1810050752
MF101454
Rhodophyta
Polysiphonia schneideri (MF101454)
22541
22457
-
Leu
TAG
[ENA]
¡û
Identical group No.170159 (1 seq.)
>CHL1810028010
KU892652
Rhodophyta
Kappaphycus alvarezii (KU892652)
18291
18209
-
Leu
TAG
[ENA]
¡û
Identical group No.170161 (1 seq.)
>CHL1810049877
MF101413
Rhodophyta
Periphykon beckeri (MF101413)
22953
22871
-
Leu
TAG
[ENA]
¡û
Identical group No.170162 (1 seq.)
>CHL1810050652
MF101448
Rhodophyta
Lophocladia kuetzingii (MF101448)
22888
22804
-
Leu
TAG
[ENA]
¡û
Identical group No.171605 (1 seq.)
>CHL1810038734
KY018922
Rhodophyta
Gracilaria changii (KY018922)
167730
167812
+
Leu
TAG
[ENA]
¡û
Identical group No.171607 (1 seq.)
>CHL1810038779
KY033529
Rhodophyta
Sheathia arcuata (KY033529)
23673
23757
+
Leu
TAG
[ENA]
¡û
Identical group No.171609 (1 seq.)
>CHL1810049825
MF101410
Rhodophyta
Laurenciella marilzae (MF101410)
22958
22874
-
Leu
TAG
[ENA]
¡û
Identical group No.171610 (1 seq.)
>CHL1810050829
MF101467
Rhodophyta
Tolypiocladia glomerulata (MF101467)
22625
22543
-
Leu
TAG
[ENA]
¡û
Identical group No.171611 (1 seq.)
>CHL1810060905
MH396013
Rhodophyta
Gracilaria vermiculophylla (MH396013)
10569
10651
+
Leu
TAG
[ENA]
¡û
Identical group No.172870 (1 seq.)
>CHL1810049850
MF101411
Rhodophyta
Acrosorium ciliolatum (MF101411)
23533
23451
-
Leu
TAG
[ENA]
¡û
Identical group No.172871 (1 seq.)
>CHL1810050049
MF101421
Rhodophyta
Bostrychia simpliciuscula (MF101421)
22343
22261
-
Leu
TAG
[ENA]
¡û
Identical group No.174124 (1 seq.)
>CHL1810024536
KU179794
Rhodophyta
Gracilariopsis lemaneiformis (KU179794)
163579
163661
+
Leu
TAG
[ENA]
¡û
Identical group No.175242 (1 seq.)
>CHL1810050677
MF101449
Rhodophyta
Kuetzingia canaliculata (MF101449)
24553
24470
-
Leu
TAG
[ENA]
¡û
Identical group No.176220 (1 seq.)
>CHL1810050576
MF101445
Rhodophyta
Sonderella linearis (MF101445)
22801
22719
-
Leu
TAG
[ENA]
¡û
Identical group No.178065 (1 seq.)
>CHL1810049799
MF101409
Rhodophyta
Platysiphonia delicata (MF101409)
23357
23275
-
Leu
TAG
[ENA]
¡û
Identical group No.178066 (1 seq.)
>CHL1810050198
MF101427
Rhodophyta
Polysiphonia elongata (MF101427)
22885
22801
-
Leu
TAG
[ENA]
¡û
Identical group No.178067 (1 seq.)
>CHL1810050601
MF101446
Rhodophyta
Gredgaria maugeana (MF101446)
22949
22867
-
Leu
TAG
[ENA]
¡û
Identical group No.178068 (1 seq.)
>CHL1810050778
MF101455
Rhodophyta
Dictyomenia sonderi (MF101455)
22884
22802
-
Leu
TAG
[ENA]
¡û
Identical group No.178450 (1 seq.)
>CHL090101594
AY673996
Rhodophyta
Gracilaria tenuistipitata var. liui
18788
18706
-
Leu
TAG
[ENA]
¡û
Identical group No.179041 (1 seq.)
>CHL1810050727
MF101452
Rhodophyta
Taenioma perpusillum (MF101452)
20493
20411
-
Leu
TAG
[ENA]
¡û
Identical group No.179825 (1 seq.)
>CHL1810010867
KF861575
Rhodophyta
Gracilaria salicornia (KF861575)
19357
19275
-
Leu
TAG
[ENA]
¡û
Identical group No.179826 (1 seq.)
>CHL1810050475
MF101441
Rhodophyta
Spyridia filamentosa (MF101441)
23215
23133
-
Leu
TAG
[ENA]
¡û
Identical group No.187398 (3 seq.)
>WENV181406151
OGCG01000007
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
98985
99068
+
Leu
TAG
[ENA]
¢þ
>CHL090100059
AB002583
Rhodophyta
Cyanidioschyzon merolae
48093
48010
-
Leu
TAG
[ENA]
¡û
>CHL090101427
AY286123
Rhodophyta
Cyanidioschyzon merolae strain DBV201
17564
17647
+
Leu
TAG
[ENA]
¡û
Identical group No.198349 (1 seq.)
>CHL1810045164
KY709209
Rhodophyta
Bulboplastis apyrenoidosa NIES-2742 (KY709209)
19779
19862
+
Leu
TAG
[ENA]
¡û
Identical group No.205492 (1 seq.)
>CHL090100267
AF022186
Rhodophyta
Cyanidium caldarium
57656
57575
-
Leu
TAG
[ENA]
¡û
Identical group No.212980 (1 seq.)
>CHL1810000564
AP012987
Rhodophyta
Porphyridium purpureum (AP012987)
107977
107895
-
Leu
TAG
[ENA]
¡û
Identical group No.217857 (1 seq.)
>CHL1810050399
MF101438
Rhodophyta
Polysiphonia scopulorum (MF101438)
22913
22832
-
Leu
TAG
[ENA]
¡û
Identical group No.220555 (1 seq.)
>CHL1810045154
KY709208
Rhodophyta
Boldia erythrosiphon UTEX LB2858 (KY709208)
80656
80576
-
Leu
TAG
[ENA]
¡û
Identical group No.226269 (1 seq.)
>CHL1810039443
KY083067
Rhodophyta
Compsopogon caeruleus (KY083067)
101814
101734
-
Leu
TAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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