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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Rhodophyta
Anticodon = TCC
HIT:
21 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.684392 (1 seq.)
>CHL1810045160
KY709208
Rhodophyta
Boldia erythrosiphon UTEX LB2858 (KY709208)
23543
23472
-
Gly
TCC
[ENA]
¡û
Identical group No.750900 (1 seq.)
>CHL1810039449
KY083067
Rhodophyta
Compsopogon caeruleus (KY083067)
45893
45822
-
Gly
TCC
[ENA]
¡û
Identical group No.786896 (1 seq.)
>CHL1810011915
KJ513670
Rhodophyta
Membranoptera weeksiae (KJ513670)
138415
138343
-
Gly
TCC
[ENA]
¡û
Identical group No.786943 (45 seq.)
>WENV181233266
OFES01000068
[OFES] coral metagenome; NA
9426
9497
+
Gly
TCC
[ENA]
¢þ
>WENV181235119
OFEW01116640
[OFEW] coral metagenome; NA
647
576
-
Gly
TCC
[ENA]
¢þ
>WENV170022080
BCQK01000006
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
19524
19596
+
Gly
TCC
[ENA]
¢þ
>WENV170023571
BCQL01000004
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
14940
15010
+
Gly
TCC
[ENA]
¢þ
>WENV170024434
BCQL01060191
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
388
316
-
Gly
TCC
[ENA]
¢þ
>CHL1810006826
KC153978
Rhodophyta
Calliarthron tuberculosum (KC153978)
139791
139719
-
Gly
TCC
[ENA]
¡û
>CHL1810008234
KC464603
Rhodophyta
Pyropia haitanensis (KC464603)
26688
26618
-
Gly
TCC
[ENA]
¡û
>CHL1810010860
KF861575
Rhodophyta
Gracilaria salicornia (KF861575)
140415
140343
-
Gly
TCC
[ENA]
¡û
>CHL1810024529
KU179794
Rhodophyta
Gracilariopsis lemaneiformis (KU179794)
40248
40320
+
Gly
TCC
[ENA]
¡û
>CHL1810028004
KU892652
Rhodophyta
Kappaphycus alvarezii (KU892652)
137543
137471
-
Gly
TCC
[ENA]
¡û
>CHL1810038727
KY018922
Rhodophyta
Gracilaria changii (KY018922)
46128
46200
+
Gly
TCC
[ENA]
¡û
>CHL1810038798
KY033529
Rhodophyta
Sheathia arcuata (KY033529)
147726
147654
-
Gly
TCC
[ENA]
¡û
>CHL1810049758
MF101408
Rhodophyta
Dipterocladia arabiensis (MF101408)
64985
65057
+
Gly
TCC
[ENA]
¡û
>CHL1810049807
MF101410
Rhodophyta
Laurenciella marilzae (MF101410)
66099
66169
+
Gly
TCC
[ENA]
¡û
>CHL1810049833
MF101411
Rhodophyta
Acrosorium ciliolatum (MF101411)
67780
67852
+
Gly
TCC
[ENA]
¡û
>CHL1810049885
MF101415
Rhodophyta
Osmundaria fimbriata (MF101415)
70402
70472
+
Gly
TCC
[ENA]
¡û
>CHL1810049981
MF101419
Rhodophyta
Bostrychia moritziana (MF101419)
64700
64772
+
Gly
TCC
[ENA]
¡û
>CHL1810050006
MF101420
Rhodophyta
Symphyocladia dendroidea (MF101420)
64258
64330
+
Gly
TCC
[ENA]
¡û
>CHL1810050057
MF101422
Rhodophyta
Caloglossa beccarii (MF101422)
61770
61842
+
Gly
TCC
[ENA]
¡û
>CHL1810050105
MF101424
Rhodophyta
Rhodomela confervoides (MF101424)
65522
65594
+
Gly
TCC
[ENA]
¡û
>CHL1810050131
MF101425
Rhodophyta
Polysiphonia brodiei (MF101425)
63520
63590
+
Gly
TCC
[ENA]
¡û
>CHL1810050156
MF101426
Rhodophyta
Vertebrata thuyoides (MF101426)
63842
63912
+
Gly
TCC
[ENA]
¡û
>CHL1810050181
MF101427
Rhodophyta
Polysiphonia elongata (MF101427)
63838
63908
+
Gly
TCC
[ENA]
¡û
>CHL1810050206
MF101428
Rhodophyta
Polysiphonia stricta (MF101428)
64963
65033
+
Gly
TCC
[ENA]
¡û
>CHL1810050283
MF101433
Rhodophyta
Vertebrata isogona (MF101433)
63836
63907
+
Gly
TCC
[ENA]
¡û
>CHL1810050308
MF101434
Rhodophyta
Herposiphonia versicolor (MF101434)
63808
63878
+
Gly
TCC
[ENA]
¡û
>CHL1810050332
MF101436
Rhodophyta
Dasya naccarioides (MF101436)
64287
64359
+
Gly
TCC
[ENA]
¡û
>CHL1810050356
MF101437
Rhodophyta
Melanothamnus harveyi (MF101437)
62268
62338
+
Gly
TCC
[ENA]
¡û
>CHL1810050381
MF101438
Rhodophyta
Polysiphonia scopulorum (MF101438)
64266
64336
+
Gly
TCC
[ENA]
¡û
>CHL1810050407
MF101439
Rhodophyta
Vertebrata australis (MF101439)
63915
63985
+
Gly
TCC
[ENA]
¡û
>CHL1810050432
MF101440
Rhodophyta
Ophidocladus simpliciusculus (MF101440)
64409
64479
+
Gly
TCC
[ENA]
¡û
>CHL1810050458
MF101441
Rhodophyta
Spyridia filamentosa (MF101441)
68394
68466
+
Gly
TCC
[ENA]
¡û
>CHL1810050509
MF101443
Rhodophyta
Dasyclonium flaccidum (MF101443)
65678
65750
+
Gly
TCC
[ENA]
¡û
>CHL1810050584
MF101446
Rhodophyta
Gredgaria maugeana (MF101446)
64279
64351
+
Gly
TCC
[ENA]
¡û
>CHL1810050609
MF101447
Rhodophyta
Thaumatella adunca (MF101447)
65270
65340
+
Gly
TCC
[ENA]
¡û
>CHL1810050634
MF101448
Rhodophyta
Lophocladia kuetzingii (MF101448)
64790
64861
+
Gly
TCC
[ENA]
¡û
>CHL1810050660
MF101449
Rhodophyta
Kuetzingia canaliculata (MF101449)
68816
68888
+
Gly
TCC
[ENA]
¡û
>CHL1810050685
MF101450
Rhodophyta
Cliftonaea pectinata (MF101450)
68164
68236
+
Gly
TCC
[ENA]
¡û
>CHL1810050710
MF101452
Rhodophyta
Taenioma perpusillum (MF101452)
60879
60951
+
Gly
TCC
[ENA]
¡û
>CHL1810050735
MF101454
Rhodophyta
Polysiphonia schneideri (MF101454)
61282
61354
+
Gly
TCC
[ENA]
¡û
>CHL1810050760
MF101455
Rhodophyta
Dictyomenia sonderi (MF101455)
64221
64293
+
Gly
TCC
[ENA]
¡û
>CHL1810060910
MH396013
Rhodophyta
Gracilaria vermiculophylla (MH396013)
68841
68913
+
Gly
TCC
[ENA]
¡û
>CHL090101587
AY673996
Rhodophyta
Gracilaria tenuistipitata var. liui
144364
144292
-
Gly
TCC
[ENA]
¡û
>CHL090103183
U38804
Rhodophyta
Porphyra purpurea
26648
26578
-
Gly
TCC
[ENA]
¡û
>CHL090900033
AF494278
Viridiplantae
Chaetosphaeridium globosum
21624
20973
-
Gly
TCC
[ENA]
¡û
Identical group No.786945 (1 seq.)
>CHL1810049910
MF101416
Rhodophyta
Caloglossa monosticha (MF101416)
61306
61378
+
Gly
TCC
[ENA]
¡û
Identical group No.789685 (3 seq.)
>WENV181406141
OGCG01000007
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
4280
4350
+
Gly
TCC
[ENA]
¢þ
>CHL090100049
AB002583
Rhodophyta
Cyanidioschyzon merolae
143526
143456
-
Gly
TCC
[ENA]
¡û
>CHL090101431
AY286123
Rhodophyta
Cyanidioschyzon merolae strain DBV201
71804
71874
+
Gly
TCC
[ENA]
¡û
Identical group No.793295 (1 seq.)
>CHL1810050232
MF101430
Rhodophyta
Bryothamnion seaforthii (MF101430)
70312
70382
+
Gly
TCC
[ENA]
¡û
Identical group No.802101 (1 seq.)
>CHL1810058647
MG598531
Rhodophyta
Grateloupia filicina (MG598531)
193017
192945
-
Gly
TCC
[ENA]
¡û
Identical group No.802102 (1 seq.)
>CHL1830002177
MF101423
Rhodophyta
Polysiphonia sertularioides (MF101423)
63477
63547
+
Gly
TCC
[ENA]
¡û
Identical group No.805630 (1 seq.)
>CHL1810045178
KY709209
Rhodophyta
Bulboplastis apyrenoidosa NIES-2742 (KY709209)
551125
551053
-
Gly
TCC
[ENA]
¡û
Identical group No.805634 (2 seq.)
>CHL1810049934
MF101417
Rhodophyta
Bostrychia tenella (MF101417)
65656
65728
+
Gly
TCC
[ENA]
¡û
>CHL1810050534
MF101444
Rhodophyta
Dipterosiphonia australica (MF101444)
64189
64261
+
Gly
TCC
[ENA]
¡û
Identical group No.808998 (2 seq.)
>CHL1810050483
MF101442
Rhodophyta
Thuretia quercifolia (MF101442)
67235
67307
+
Gly
TCC
[ENA]
¡û
>CHL1810050812
MF101467
Rhodophyta
Tolypiocladia glomerulata (MF101467)
63187
63257
+
Gly
TCC
[ENA]
¡û
Identical group No.812217 (1 seq.)
>CHL1830002162
MF101418
Rhodophyta
Caloglossa intermedia (MF101418)
61833
61905
+
Gly
TCC
[ENA]
¡û
Identical group No.815042 (3 seq.)
>CHL1810049858
MF101413
Rhodophyta
Periphykon beckeri (MF101413)
64811
64883
+
Gly
TCC
[ENA]
¡û
>CHL1810050786
MF101465
Rhodophyta
Digenea simplex (MF101465)
66570
66640
+
Gly
TCC
[ENA]
¡û
>CHL090900128
AP005672
Viridiplantae
Physcomitrella patens subsp. patens
61069
61691
+
Gly
TCC
[ENA]
¡û
Identical group No.816402 (1 seq.)
>CHL090100892
AP006715
Rhodophyta
Porphyra yezoensis
26755
26685
-
Gly
TCC
[ENA]
¡û
Identical group No.816424 (1 seq.)
>CHL090100269
AF022186
Rhodophyta
Cyanidium caldarium
24675
24605
-
Gly
TCC
[ENA]
¡û
Identical group No.820599 (1 seq.)
>CHL1810050032
MF101421
Rhodophyta
Bostrychia simpliciuscula (MF101421)
63191
63263
+
Gly
TCC
[ENA]
¡û
Identical group No.825964 (1 seq.)
>CHL1810050258
MF101432
Rhodophyta
Polysiphonia infestans (MF101432)
62627
62697
+
Gly
TCC
[ENA]
¡û
Identical group No.828073 (1 seq.)
>CHL1810000542
AP012987
Rhodophyta
Porphyridium purpureum (AP012987)
1867
1939
+
Gly
TCC
[ENA]
¡û
Identical group No.828095 (1 seq.)
>CHL1810050559
MF101445
Rhodophyta
Sonderella linearis (MF101445)
65062
65134
+
Gly
TCC
[ENA]
¡û
Identical group No.833188 (1 seq.)
>CHL1810049783
MF101409
Rhodophyta
Platysiphonia delicata (MF101409)
65185
65257
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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