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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Rhodophyta
Anticodon = TGA
HIT:
41 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.42544 (1 seq.)
>CHL1810039437
KY083067
Rhodophyta
Compsopogon caeruleus (KY083067)
142635
142724
+
Ser
TGA
[ENA]
¡û
Identical group No.45108 (1 seq.)
>CHL1810049982
MF101419
Rhodophyta
Bostrychia moritziana (MF101419)
108816
108903
+
Ser
TGA
[ENA]
¡û
Identical group No.45596 (1 seq.)
>CHL1810050459
MF101441
Rhodophyta
Spyridia filamentosa (MF101441)
113968
114055
+
Ser
TGA
[ENA]
¡û
Identical group No.52399 (1 seq.)
>CHL1810045145
KY709208
Rhodophyta
Boldia erythrosiphon UTEX LB2858 (KY709208)
125264
125350
+
Ser
TGA
[ENA]
¡û
Identical group No.53208 (1 seq.)
>CHL090103158
U38804
Rhodophyta
Porphyra purpurea
82688
82777
+
Ser
TGA
[ENA]
¡û
Identical group No.54736 (1 seq.)
>CHL1810006827
KC153978
Rhodophyta
Calliarthron tuberculosum (KC153978)
89983
89897
-
Ser
TGA
[ENA]
¡û
Identical group No.66629 (1 seq.)
>CHL1810024530
KU179794
Rhodophyta
Gracilariopsis lemaneiformis (KU179794)
87944
88032
+
Ser
TGA
[ENA]
¡û
Identical group No.74556 (4 seq.)
>CHL1810011916
KJ513670
Rhodophyta
Membranoptera weeksiae (KJ513670)
91446
91361
-
Ser
TGA
[ENA]
¡û
>CHL1810049759
MF101408
Rhodophyta
Dipterocladia arabiensis (MF101408)
109233
109320
+
Ser
TGA
[ENA]
¡û
>CHL1810050233
MF101430
Rhodophyta
Bryothamnion seaforthii (MF101430)
114857
114942
+
Ser
TGA
[ENA]
¡û
>CHL1810050333
MF101436
Rhodophyta
Dasya naccarioides (MF101436)
109671
109759
+
Ser
TGA
[ENA]
¡û
Identical group No.74558 (6 seq.)
>CHL1810049808
MF101410
Rhodophyta
Laurenciella marilzae (MF101410)
111213
111298
+
Ser
TGA
[ENA]
¡û
>CHL1810049886
MF101415
Rhodophyta
Osmundaria fimbriata (MF101415)
116156
116241
+
Ser
TGA
[ENA]
¡û
>CHL1810049911
MF101416
Rhodophyta
Caloglossa monosticha (MF101416)
105063
105150
+
Ser
TGA
[ENA]
¡û
>CHL1810050484
MF101442
Rhodophyta
Thuretia quercifolia (MF101442)
111764
111849
+
Ser
TGA
[ENA]
¡û
>CHL1810050635
MF101448
Rhodophyta
Lophocladia kuetzingii (MF101448)
108426
108513
+
Ser
TGA
[ENA]
¡û
>CHL1810050661
MF101449
Rhodophyta
Kuetzingia canaliculata (MF101449)
114613
114698
+
Ser
TGA
[ENA]
¡û
Identical group No.74561 (1 seq.)
>CHL1810050132
MF101425
Rhodophyta
Polysiphonia brodiei (MF101425)
107286
107373
+
Ser
TGA
[ENA]
¡û
Identical group No.76163 (4 seq.)
>CHL1810050157
MF101426
Rhodophyta
Vertebrata thuyoides (MF101426)
107313
107400
+
Ser
TGA
[ENA]
¡û
>CHL1810050182
MF101427
Rhodophyta
Polysiphonia elongata (MF101427)
107866
107953
+
Ser
TGA
[ENA]
¡û
>CHL1810050357
MF101437
Rhodophyta
Melanothamnus harveyi (MF101437)
105625
105712
+
Ser
TGA
[ENA]
¡û
>CHL1810050408
MF101439
Rhodophyta
Vertebrata australis (MF101439)
107467
107554
+
Ser
TGA
[ENA]
¡û
Identical group No.77479 (4 seq.)
>CHL1810050007
MF101420
Rhodophyta
Symphyocladia dendroidea (MF101420)
107939
108024
+
Ser
TGA
[ENA]
¡û
>CHL1810050081
MF101423
Rhodophyta
Polysiphonia sertularioides (MF101423)
106575
106662
+
Ser
TGA
[ENA]
¡û
>CHL1810050510
MF101443
Rhodophyta
Dasyclonium flaccidum (MF101443)
109586
109671
+
Ser
TGA
[ENA]
¡û
>CHL1810050761
MF101455
Rhodophyta
Dictyomenia sonderi (MF101455)
108907
108992
+
Ser
TGA
[ENA]
¡û
Identical group No.77481 (2 seq.)
>CHL1810038728
KY018922
Rhodophyta
Gracilaria changii (KY018922)
92973
93060
+
Ser
TGA
[ENA]
¡û
>CHL1810050309
MF101434
Rhodophyta
Herposiphonia versicolor (MF101434)
107165
107250
+
Ser
TGA
[ENA]
¡û
Identical group No.78408 (1 seq.)
>CHL1810050058
MF101422
Rhodophyta
Caloglossa beccarii (MF101422)
105191
105276
+
Ser
TGA
[ENA]
¡û
Identical group No.78410 (1 seq.)
>CHL1810050686
MF101450
Rhodophyta
Cliftonaea pectinata (MF101450)
112934
113019
+
Ser
TGA
[ENA]
¡û
Identical group No.78412 (1 seq.)
>CHL1810058648
MG598531
Rhodophyta
Grateloupia filicina (MG598531)
135338
135253
-
Ser
TGA
[ENA]
¡û
Identical group No.79318 (1 seq.)
>CHL1810045167
KY709209
Rhodophyta
Bulboplastis apyrenoidosa NIES-2742 (KY709209)
171307
171393
+
Ser
TGA
[ENA]
¡û
Identical group No.79319 (1 seq.)
>CHL1810049935
MF101417
Rhodophyta
Bostrychia tenella (MF101417)
109909
109994
+
Ser
TGA
[ENA]
¡û
Identical group No.80231 (1 seq.)
>CHL1810050433
MF101440
Rhodophyta
Ophidocladus simpliciusculus (MF101440)
108226
108313
+
Ser
TGA
[ENA]
¡û
Identical group No.81050 (3 seq.)
>CHL1810049958
MF101418
Rhodophyta
Caloglossa intermedia (MF101418)
105515
105602
+
Ser
TGA
[ENA]
¡û
>CHL1810050560
MF101445
Rhodophyta
Sonderella linearis (MF101445)
108979
109066
+
Ser
TGA
[ENA]
¡û
>CHL1810050787
MF101465
Rhodophyta
Digenea simplex (MF101465)
114118
114205
+
Ser
TGA
[ENA]
¡û
Identical group No.81052 (2 seq.)
>CHL1810050106
MF101424
Rhodophyta
Rhodomela confervoides (MF101424)
113821
113908
+
Ser
TGA
[ENA]
¡û
>CHL1810050284
MF101433
Rhodophyta
Vertebrata isogona (MF101433)
107284
107371
+
Ser
TGA
[ENA]
¡û
Identical group No.81053 (1 seq.)
>CHL1810050610
MF101447
Rhodophyta
Thaumatella adunca (MF101447)
109178
109263
+
Ser
TGA
[ENA]
¡û
Identical group No.81055 (3 seq.)
>CHL1810050207
MF101428
Rhodophyta
Polysiphonia stricta (MF101428)
108784
108871
+
Ser
TGA
[ENA]
¡û
>CHL1810050736
MF101454
Rhodophyta
Polysiphonia schneideri (MF101454)
104581
104668
+
Ser
TGA
[ENA]
¡û
>WENV029001
AACY021161949
Marine microbial communities from Global Ocean Sampling (GOS)
240
150
-
Ser
TGA
[ENA]
Identical group No.81801 (1 seq.)
>CHL1810028005
KU892652
Rhodophyta
Kappaphycus alvarezii (KU892652)
90336
90251
-
Ser
TGA
[ENA]
¡û
Identical group No.81803 (1 seq.)
>CHL1810049859
MF101413
Rhodophyta
Periphykon beckeri (MF101413)
108541
108626
+
Ser
TGA
[ENA]
¡û
Identical group No.82546 (1 seq.)
>CHL1810038799
KY033529
Rhodophyta
Sheathia arcuata (KY033529)
96123
96038
-
Ser
TGA
[ENA]
¡û
Identical group No.82548 (1 seq.)
>CHL1810050813
MF101467
Rhodophyta
Tolypiocladia glomerulata (MF101467)
106417
106502
+
Ser
TGA
[ENA]
¡û
Identical group No.82549 (2 seq.)
>CHL1810060911
MH396013
Rhodophyta
Gracilaria vermiculophylla (MH396013)
116130
116215
+
Ser
TGA
[ENA]
¡û
>CHL090101588
AY673996
Rhodophyta
Gracilaria tenuistipitata var. liui
96994
96909
-
Ser
TGA
[ENA]
¡û
Identical group No.83262 (2 seq.)
>CHL1810049784
MF101409
Rhodophyta
Platysiphonia delicata (MF101409)
109955
110042
+
Ser
TGA
[ENA]
¡û
>CHL1810049834
MF101411
Rhodophyta
Acrosorium ciliolatum (MF101411)
114889
114974
+
Ser
TGA
[ENA]
¡û
Identical group No.83263 (1 seq.)
>CHL1810050033
MF101421
Rhodophyta
Bostrychia simpliciuscula (MF101421)
106941
107026
+
Ser
TGA
[ENA]
¡û
Identical group No.83264 (1 seq.)
>CHL1810050535
MF101444
Rhodophyta
Dipterosiphonia australica (MF101444)
107786
107873
+
Ser
TGA
[ENA]
¡û
Identical group No.84463 (1 seq.)
>CHL1810050259
MF101432
Rhodophyta
Polysiphonia infestans (MF101432)
105924
106011
+
Ser
TGA
[ENA]
¡û
Identical group No.84997 (1 seq.)
>CHL1810000549
AP012987
Rhodophyta
Porphyridium purpureum (AP012987)
76835
76922
+
Ser
TGA
[ENA]
¡û
Identical group No.85812 (1 seq.)
>CHL1810050585
MF101446
Rhodophyta
Gredgaria maugeana (MF101446)
108046
108133
+
Ser
TGA
[ENA]
¡û
Identical group No.86339 (1 seq.)
>CHL1810050711
MF101452
Rhodophyta
Taenioma perpusillum (MF101452)
103921
104008
+
Ser
TGA
[ENA]
¡û
Identical group No.86813 (1 seq.)
>CHL1810010861
KF861575
Rhodophyta
Gracilaria salicornia (KF861575)
93302
93215
-
Ser
TGA
[ENA]
¡û
Identical group No.86816 (1 seq.)
>CHL1810050382
MF101438
Rhodophyta
Polysiphonia scopulorum (MF101438)
107951
108038
+
Ser
TGA
[ENA]
¡û
Identical group No.91350 (3 seq.)
>WENV181406147
OGCG01000007
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
55547
55633
+
Ser
TGA
[ENA]
¢þ
>CHL090100055
AB002583
Rhodophyta
Cyanidioschyzon merolae
92430
92344
-
Ser
TGA
[ENA]
¡û
>CHL090101437
AY286123
Rhodophyta
Cyanidioschyzon merolae strain DBV201
122921
123007
+
Ser
TGA
[ENA]
¡û
Identical group No.103689 (1 seq.)
>CHL090100252
AF022186
Rhodophyta
Cyanidium caldarium
157309
157395
+
Ser
TGA
[ENA]
¡û
Identical group No.103690 (1 seq.)
>CHL090100865
AP006715
Rhodophyta
Porphyra yezoensis
83199
83285
+
Ser
TGA
[ENA]
¡û
Identical group No.106832 (1 seq.)
>CHL1810008207
KC464603
Rhodophyta
Pyropia haitanensis (KC464603)
83121
83205
+
Ser
TGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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