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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
Rhodophyta
Anticodon = TGT
HIT:
28 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.480813 (3 seq.)
>CHL1810011914
KJ513670
Rhodophyta
Membranoptera weeksiae (KJ513670)
139962
139890
-
Thr
TGT
[ENA]
¡û
>CHL1810050583
MF101446
Rhodophyta
Gredgaria maugeana (MF101446)
62733
62805
+
Thr
TGT
[ENA]
¡û
>CHL1810050684
MF101450
Rhodophyta
Cliftonaea pectinata (MF101450)
66678
66750
+
Thr
TGT
[ENA]
¡û
Identical group No.480870 (1 seq.)
>CHL1810049884
MF101415
Rhodophyta
Osmundaria fimbriata (MF101415)
68722
68794
+
Thr
TGT
[ENA]
¡û
Identical group No.480874 (2 seq.)
>CHL1810049909
MF101416
Rhodophyta
Caloglossa monosticha (MF101416)
59746
59818
+
Thr
TGT
[ENA]
¡û
>CHL1810050659
MF101449
Rhodophyta
Kuetzingia canaliculata (MF101449)
67103
67175
+
Thr
TGT
[ENA]
¡û
Identical group No.480879 (22 seq.)
>CHL1810010859
KF861575
Rhodophyta
Gracilaria salicornia (KF861575)
142061
141989
-
Thr
TGT
[ENA]
¡û
>CHL1810038726
KY018922
Rhodophyta
Gracilaria changii (KY018922)
44549
44621
+
Thr
TGT
[ENA]
¡û
>CHL1810049757
MF101408
Rhodophyta
Dipterocladia arabiensis (MF101408)
63428
63500
+
Thr
TGT
[ENA]
¡û
>CHL1810049832
MF101411
Rhodophyta
Acrosorium ciliolatum (MF101411)
66224
66296
+
Thr
TGT
[ENA]
¡û
>CHL1810050005
MF101420
Rhodophyta
Symphyocladia dendroidea (MF101420)
62705
62777
+
Thr
TGT
[ENA]
¡û
>CHL1810050080
MF101423
Rhodophyta
Polysiphonia sertularioides (MF101423)
61854
61926
+
Thr
TGT
[ENA]
¡û
>CHL1810050130
MF101425
Rhodophyta
Polysiphonia brodiei (MF101425)
61993
62065
+
Thr
TGT
[ENA]
¡û
>CHL1810050155
MF101426
Rhodophyta
Vertebrata thuyoides (MF101426)
62331
62403
+
Thr
TGT
[ENA]
¡û
>CHL1810050180
MF101427
Rhodophyta
Polysiphonia elongata (MF101427)
62285
62357
+
Thr
TGT
[ENA]
¡û
>CHL1810050205
MF101428
Rhodophyta
Polysiphonia stricta (MF101428)
63363
63435
+
Thr
TGT
[ENA]
¡û
>CHL1810050231
MF101430
Rhodophyta
Bryothamnion seaforthii (MF101430)
68775
68847
+
Thr
TGT
[ENA]
¡û
>CHL1810050282
MF101433
Rhodophyta
Vertebrata isogona (MF101433)
62317
62389
+
Thr
TGT
[ENA]
¡û
>CHL1810050331
MF101436
Rhodophyta
Dasya naccarioides (MF101436)
62768
62842
+
Thr
TGT
[ENA]
¡û
>CHL1810050355
MF101437
Rhodophyta
Melanothamnus harveyi (MF101437)
60789
60861
+
Thr
TGT
[ENA]
¡û
>CHL1810050380
MF101438
Rhodophyta
Polysiphonia scopulorum (MF101438)
62721
62793
+
Thr
TGT
[ENA]
¡û
>CHL1810050508
MF101443
Rhodophyta
Dasyclonium flaccidum (MF101443)
64180
64252
+
Thr
TGT
[ENA]
¡û
>CHL1810050533
MF101444
Rhodophyta
Dipterosiphonia australica (MF101444)
62660
62732
+
Thr
TGT
[ENA]
¡û
>CHL1810050633
MF101448
Rhodophyta
Lophocladia kuetzingii (MF101448)
63267
63339
+
Thr
TGT
[ENA]
¡û
>CHL1810050709
MF101452
Rhodophyta
Taenioma perpusillum (MF101452)
59356
59428
+
Thr
TGT
[ENA]
¡û
>CHL1810050734
MF101454
Rhodophyta
Polysiphonia schneideri (MF101454)
59779
59851
+
Thr
TGT
[ENA]
¡û
>CHL1810050785
MF101465
Rhodophyta
Digenea simplex (MF101465)
65025
65097
+
Thr
TGT
[ENA]
¡û
>CHL1810050811
MF101467
Rhodophyta
Tolypiocladia glomerulata (MF101467)
61578
61650
+
Thr
TGT
[ENA]
¡û
Identical group No.490438 (3 seq.)
>WENV181406153
OGCG01000007
[OGCG] hot springs metagenome; Joseph's Coat, Yellowstone National Park, Washington, USA
141872
141945
+
Thr
TGT
[ENA]
¢þ
>CHL090100061
AB002583
Rhodophyta
Cyanidioschyzon merolae
5212
5139
-
Thr
TGT
[ENA]
¡û
>CHL090101429
AY286123
Rhodophyta
Cyanidioschyzon merolae strain DBV201
60167
60240
+
Thr
TGT
[ENA]
¡û
Identical group No.501040 (3 seq.)
>WENV170022079
BCQK01000006
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
18021
18095
+
Thr
TGT
[ENA]
¢þ
>WENV170024305
BCQL01041257
[BCQL] museum specimen metagenome; Liagora japonica specimen isolated from Misaki, Miura, Kanagawa
730
656
-
Thr
TGT
[ENA]
¢þ
>CHL1810050608
MF101447
Rhodophyta
Thaumatella adunca (MF101447)
63639
63711
+
Thr
TGT
[ENA]
¡û
Identical group No.504570 (1 seq.)
>CHL1810045156
KY709208
Rhodophyta
Boldia erythrosiphon UTEX LB2858 (KY709208)
51927
51853
-
Thr
TGT
[ENA]
¡û
Identical group No.510132 (3 seq.)
>CHL1810008233
KC464603
Rhodophyta
Pyropia haitanensis (KC464603)
28220
28148
-
Thr
TGT
[ENA]
¡û
>CHL090100891
AP006715
Rhodophyta
Porphyra yezoensis
28291
28219
-
Thr
TGT
[ENA]
¡û
>CHL090103182
U38804
Rhodophyta
Porphyra purpurea
28167
28095
-
Thr
TGT
[ENA]
¡û
Identical group No.523584 (3 seq.)
>CHL1810006825
KC153978
Rhodophyta
Calliarthron tuberculosum (KC153978)
141410
141336
-
Thr
TGT
[ENA]
¡û
>CHL1810049857
MF101413
Rhodophyta
Periphykon beckeri (MF101413)
63255
63327
+
Thr
TGT
[ENA]
¡û
>CHL1810058646
MG598531
Rhodophyta
Grateloupia filicina (MG598531)
194690
194618
-
Thr
TGT
[ENA]
¡û
Identical group No.523625 (3 seq.)
>CHL1810038797
KY033529
Rhodophyta
Sheathia arcuata (KY033529)
149316
149242
-
Thr
TGT
[ENA]
¡û
>CHL1810050307
MF101434
Rhodophyta
Herposiphonia versicolor (MF101434)
62233
62307
+
Thr
TGT
[ENA]
¡û
>CHL1810050406
MF101439
Rhodophyta
Vertebrata australis (MF101439)
62398
62470
+
Thr
TGT
[ENA]
¡û
Identical group No.536463 (1 seq.)
>CHL1810050056
MF101422
Rhodophyta
Caloglossa beccarii (MF101422)
60261
60333
+
Thr
TGT
[ENA]
¡û
Identical group No.549223 (1 seq.)
>CHL1810045184
KY709209
Rhodophyta
Bulboplastis apyrenoidosa NIES-2742 (KY709209)
141401
141329
-
Thr
TGT
[ENA]
¡û
Identical group No.549229 (1 seq.)
>CHL1810049933
MF101417
Rhodophyta
Bostrychia tenella (MF101417)
64055
64127
+
Thr
TGT
[ENA]
¡û
Identical group No.561536 (1 seq.)
>CHL1810050431
MF101440
Rhodophyta
Ophidocladus simpliciusculus (MF101440)
62865
62937
+
Thr
TGT
[ENA]
¡û
Identical group No.561542 (4 seq.)
>CHL1810024528
KU179794
Rhodophyta
Gracilariopsis lemaneiformis (KU179794)
38603
38675
+
Thr
TGT
[ENA]
¡û
>CHL1810049782
MF101409
Rhodophyta
Platysiphonia delicata (MF101409)
63620
63692
+
Thr
TGT
[ENA]
¡û
>CHL1810049957
MF101418
Rhodophyta
Caloglossa intermedia (MF101418)
60278
60350
+
Thr
TGT
[ENA]
¡û
>CHL1810050482
MF101442
Rhodophyta
Thuretia quercifolia (MF101442)
65710
65782
+
Thr
TGT
[ENA]
¡û
Identical group No.581965 (1 seq.)
>CHL1810028003
KU892652
Rhodophyta
Kappaphycus alvarezii (KU892652)
139125
139053
-
Thr
TGT
[ENA]
¡û
Identical group No.587048 (1 seq.)
>CHL090100241
AF022186
Rhodophyta
Cyanidium caldarium
4334
4406
+
Thr
TGT
[ENA]
¡û
Identical group No.592272 (1 seq.)
>CHL1810049806
MF101410
Rhodophyta
Laurenciella marilzae (MF101410)
64511
64583
+
Thr
TGT
[ENA]
¡û
Identical group No.592289 (1 seq.)
>CHL1810060909
MH396013
Rhodophyta
Gracilaria vermiculophylla (MH396013)
67182
67254
+
Thr
TGT
[ENA]
¡û
Identical group No.601888 (1 seq.)
>CHL1810050031
MF101421
Rhodophyta
Bostrychia simpliciuscula (MF101421)
61614
61686
+
Thr
TGT
[ENA]
¡û
Identical group No.611313 (1 seq.)
>CHL1810039445
KY083067
Rhodophyta
Compsopogon caeruleus (KY083067)
74032
73958
-
Thr
TGT
[ENA]
¡û
Identical group No.619482 (1 seq.)
>CHL1810050257
MF101432
Rhodophyta
Polysiphonia infestans (MF101432)
61129
61201
+
Thr
TGT
[ENA]
¡û
Identical group No.627278 (1 seq.)
>CHL1810000561
AP012987
Rhodophyta
Porphyridium purpureum (AP012987)
143604
143530
-
Thr
TGT
[ENA]
¡û
Identical group No.627323 (1 seq.)
>CHL1810050558
MF101445
Rhodophyta
Sonderella linearis (MF101445)
63526
63600
+
Thr
TGT
[ENA]
¡û
Identical group No.639054 (1 seq.)
>CHL1810050759
MF101455
Rhodophyta
Dictyomenia sonderi (MF101455)
62675
62747
+
Thr
TGT
[ENA]
¡û
Identical group No.641647 (1 seq.)
>CHL090101586
AY673996
Rhodophyta
Gracilaria tenuistipitata var. liui
145979
145905
-
Thr
TGT
[ENA]
¡û
Identical group No.646351 (1 seq.)
>CHL1810049980
MF101419
Rhodophyta
Bostrychia moritziana (MF101419)
63199
63273
+
Thr
TGT
[ENA]
¡û
Identical group No.652692 (2 seq.)
>CHL1810050104
MF101424
Rhodophyta
Rhodomela confervoides (MF101424)
63939
64011
+
Thr
TGT
[ENA]
¡û
>CHL1810050457
MF101441
Rhodophyta
Spyridia filamentosa (MF101441)
66737
66809
+
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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